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Pathway Studio specifications


Unique identifier OMICS_02977
Name Pathway Studio
Interface Web user interface
Restrictions to use License purchase required
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Pathway Studio

Pathway Studio citations


Parallel mRNA, proteomics and miRNA expression analysis in cell line models of the intestine

PMCID: 5685843
PMID: 29151691
DOI: 10.3748/wjg.v23.i41.7369

[…] interactions was performed using targetscan 6.1. go biological process, molecular function and cellular component enrichment analysis was carried out for the de mirna, protein and mrna lists via the pathway studio 11.3 web interface using their mammalian database., differential expression (de) profiling comparing the intestinal cell lines ht-29 and caco-2 identified 1795 genes, 168 proteins […]


Translation in astrocyte distal processes sets molecular heterogeneity at the gliovascular interface

PMCID: 5368712
PMID: 28377822
DOI: 10.1038/celldisc.2017.5

[…] using euclidean distance and average linkage clustering. raw data files are available on the geo repository ( under accession number gse76299., we used the text-mining pathway studio resnet database (ariadne genomics, rockville, md, usa) and the gsea tool [] in pathway studio 11.0.5 [] to identify overrepresented signaling pathways and biological processes within […]


Lymphocytic, cytokine and transcriptomic profiles in peripheral blood of dogs with atopic dermatitis

PMCID: 4995625
PMID: 27553600
DOI: 10.1186/s12917-016-0805-6

[…] microarray data were deposited at the gene expression omnibus data repository under the number gse76119., to identify signaling pathways and gene function the microarray data was analyzed using pathway studio 11 (ariadne genomics). this is a database consisting of millions of individually modeled relationships between proteins, genes, complexes, cells, tissues and diseases []., to verify […]


Molecular association of pathogenetic contributors to pre eclampsia (pre eclampsia associome)

BMC Syst Biol
PMCID: 4407242
PMID: 25879409
DOI: 10.1186/1752-0509-9-S2-S4

[…] aim of this work was to analyse the characteristic features of genetic networks that describe interactions between comorbid diseases, using pre-eclampsia as a case in point., the use of andsystem, pathway studio and string computer tools based on text-mining and database-mining approaches allowed us to reconstruct associative networks, representing molecular genetic interactions between genes, […]


Systems approach for the selection of micro RNAs as therapeutic biomarkers of anti EGFR monoclonal antibody treatment in colorectal cancer

Sci Rep
PMCID: 5389028
PMID: 25622824
DOI: 10.1038/srep08013

[…] for predictions from three individual algorithms, i.e., pictar, miranda, dianamicrot, and from the intersection of their predictions. experimentally validated mtis are obtained from tarbase and pathway studio. as demonstrated in , the percentage obtained from intersection of the three prediction algorithms is higher than that obtained using any of the three prediction algorithms used […]


Pathway and Network Approaches for Identification of Cancer Signature Markers from Omics Data

PMCID: 4278915
PMID: 25553089
DOI: 10.7150/jca.10631

[…] contained in the scientific literature, software tools have been developed that provide improved integration of text-mining results with other data resources. for example, ipa (ingenuity) , kegg , pathway studio and hprd use text-mining to integrate gene/protein-phenotype associations linking genes and protein variants to the diseases, toxic effects and drug response to their knowledge […]

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Pathway Studio institution(s)
Ariadne Genomics, Inc, Chinakville, MD, USA

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