Pathway Studio statistics

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Citations per year

Number of citations per year for the bioinformatics software tool Pathway Studio
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Tool usage distribution map

This map represents all the scientific publications referring to Pathway Studio per scientific context
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Associated diseases

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Protocols

Pathway Studio specifications

Information


Unique identifier OMICS_02977
Name Pathway Studio
Interface Web user interface
Restrictions to use License purchase required
Computer skills Basic
Stability Stable
Maintained Yes

Publication for Pathway Studio

Pathway Studio citations

 (84)
library_books

Transcriptome profiling of the interconnection of pathways involved in malignant transformation and response to hypoxia

2018
Oncotarget
PMCID: 5929421
PMID: 29731978
DOI: 10.18632/oncotarget.24808

[…] classification stringency (default). For visualization of the enrichment analysis the application Enrichment map [] was used for the program Cytoscape []. Enriched sub-networks were identified using Pathway Studio’s Expression regulatory sub-network enrichment, Elsevier’s Pathway Studio (11.2.5.9) (https://www.elsevier.com/solutions/pathway-studio-biological-research). […]

library_books

Connexin 43 Controls the Astrocyte Immunoregulatory Phenotype

2018
Brain Sci
PMCID: 5924386
PMID: 29565275
DOI: 10.3390/brainsci8040050

[…] NAs with more than 50 reads in Cx43KO were selected; for genes downregulated in Cx43KO, only mRNAs with more than 50 reads in Cx43FL were selected;Gene Ontology (GO) analyses: We used the text-mining Pathway Studio ResNet database (Ariadne Genomics, Rockville, MD, USA) and the GSEA tool [] in Pathway Studio 11.0.5 [] to identify over-represented biological processes within our differentially expre […]

library_books

FunGeneNet: a web tool to estimate enrichment of functional interactions in experimental gene sets

2018
BMC Genomics
PMCID: 5836822
PMID: 29504895
DOI: 10.1186/s12864-018-4474-7

[…] – for example, KEGG PATHWAY [], BioCyc [], BioGRID [] and IntAct [].There are systems that allow the reconstruction of gene networks for a given set of genes/proteins including FunCoup [], STRING [], Pathway Studio [], Ingenuity Pathway Analysis [], PINA [], GeneMANIA [] and ReactomeFIViz []. These systems use various information sources on interactions of molecular genetic objects, including scie […]

library_books

Asymmetric dimethylarginine (ADMA) is identified as a potential biomarker of insulin resistance in skeletal muscle

2018
Sci Rep
PMCID: 5794993
PMID: 29391561
DOI: 10.1038/s41598-018-20549-0

[…] Pathway Studio 10.0 software (Ariadne Genomics, Rockville, MD) was utilized to analyze the functional interactions. It was used to identify specific gene/proteins interact with metabolites that are di […]

library_books

Gene level association analysis of systemic sclerosis: A comparison of African Americans and White populations

2018
PLoS One
PMCID: 5749683
PMID: 29293537
DOI: 10.1371/journal.pone.0189498

[…] oth populations was the same, rs3780540, and the MAF was actually higher in African Americans (0.116) than in Whites (0.0179), yet it was only significant in Whites.An interaction network built using Pathway Studio detected a large number of interactions between genes associated with SSc risk. Genes with the largest number of interactions include ITGAM, AIF1, STAT1, IL12RB2; these genes form hubs […]

call_split

Coupling between Myogenesis and Angiogenesis during Skeletal Muscle Regeneration Is Stimulated by Restorative Macrophages

2017
Stem Cell Reports
PMCID: 5785732
PMID: 29198825
DOI: 10.1016/j.stemcr.2017.10.027
call_split See protocol

[…] and analyzed in an unsupervised way by principal component analysis, and a one-way ANOVA was applied to extract DEGs using PartekGS software. Cluster analysis and enrichment were made using DAVID and Pathway Studio software (the strategy is presented in J). A list of genes expressed by both ECs and MPCs was finalized (). […]


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Pathway Studio institution(s)
Ariadne Genomics, Inc, Chinakville, MD, USA

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