Pathway Tools protocols

Pathway Tools specifications


Unique identifier OMICS_03843
Name Pathway Tools
Software type Package/Module
Interface Graphical user interface
Restrictions to use Academic or non-commercial use
Input format PathoLogic, DAT, FBA
Output format FLATFILE
Operating system Unix/Linux, Mac OS, Windows
Computer skills Medium
Version 19.0
Stability Stable
Maintained Yes


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  • person_outline Pathway Tools Team <>

Publications for Pathway Tools

Pathway Tools IN pipeline

PMCID: 1669763
PMID: 17142235
DOI: 10.1093/nar/gkl858

[…] using phylip (36). trees were validated by bootstrapping (37) using a minimum of 100 replicates., to help users understand the function of the bacterial proteins in context, we have adopted the pathway tools system (15) to derive pathways from genome annotation and to fill potential gaps in annotation known as pathway holes. the system takes a list of protein names, descriptions and ec […]

Pathway Tools institution(s)
Artificial Intelligence Center, SRI International, Menlo Park, CA, USA
Pathway Tools funding source(s)
Supported by grants GM75742, GM080746 and GM077678 from the National Institutes of Health.

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