PathwayExplorer protocols

PathwayExplorer specifications

Information


Unique identifier OMICS_12662
Name PathwayExplorer
Interface Web user interface
Restrictions to use None
Input data Expression data files
Input format Tab-delimited text format
Output data Pathway maps produced can be downloaded as PNG, JPG or as high-resolution vector graphics SVG.
Computer skills Basic
Version 3.0.2
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Zlatko Trajanoski <>

Information


Unique identifier OMICS_12662
Name PathwayExplorer
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Input data Expression data files
Input format Tab-delimited text format
Output data Pathway maps produced can be downloaded as PNG, JPG or as high-resolution vector graphics SVG.
Operating system Unix/Linux, Mac OS, Windows
Programming languages Java
Computer skills Medium
Version 3.0.2
Stability Stable
Maintained Yes

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Versioning


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Documentation


Maintainer


  • person_outline Zlatko Trajanoski <>

Publication for PathwayExplorer

PathwayExplorer IN pipelines

 (2)
2009
PMCID: 2765082
PMID: 19689276
DOI: 10.2174/092986709788803132

[…] expression profiles of genes or proteins simultaneously onto major, currently available regulatory, metabolic and cellular pathways (kegg, biocarta, genmapp) as for example implemented in the pathwayexplorer [105]., in the case of uncharacterized genes, de novo functional annotation can be performed on a sequence segment/domain-wise basis. for this purpose several prediction tools need […]

2008
PMCID: 2588608
PMID: 18983679
DOI: 10.1186/1471-2164-9-525

[…] with a solid platform for comparative metabolomics in the phylum nematoda., although other excellent kegg pathway mapping software platforms exist for est-related data – such as estexplorer [17] and pathwayexplorer [18] – the main aim of the nemapath database is to provide pre-compiled pan-phylum comparative metabolomics for an important and oft-studied group of parasites, as well […]

PathwayExplorer institution(s)
Institute for Genomics and Bioinformatics and Christian-Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Graz, Austria

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