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PathwayLinker specifications

Information


Unique identifier OMICS_08042
Name PathwayLinker
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

Publication for PathwayLinker

PathwayLinker citations

 (3)
library_books

A 22q11.2 amplification in the region encoding microRNA 650 correlates with the epithelial to mesenchymal transition in breast cancer primary cultures of Mexican patients

2017
PMCID: 5238778
PMID: 28101578
DOI: 10.3892/ijo.2017.3842

[…] an.org/), miRDB (http://mirdb.org/miRDB/) and microRNA.org (http://www.microrna.org/). We searched for the proteins encoded by the target genes identified. The online platform Pathway Linker® (http://pathwaylinker.org) was used to determine protein-protein interaction networks; this platform uses three different databases: KEGG (Kyoto Encyclopedia of Genes and Genomes), Reactome and SignaLink data […]

library_books

Type 3 Diabetes: Cross Talk between Differentially Regulated Proteins of Type 2 Diabetes Mellitus and Alzheimer’s Disease

2016
Sci Rep
PMCID: 4858691
PMID: 27151376
DOI: 10.1038/srep25589

[…] ated protein- protein interactions identified by different biochemical assays. This will generate the list of protein interactors to these query proteins. The total subset of proteins was analyzed by Pathwaylinker2.0 (http://pathwaylinker.org/). It creates a master network among the queried proteins and their neighbors. This network was checked for the pathways mostly followed by total subset of 7 […]

library_books

Navigating the Multilayered Organization of Eukaryotic Signaling: A New Trend in Data Integration

2014
PLoS Comput Biol
PMCID: 3923657
PMID: 24550716
DOI: 10.1371/journal.pcbi.1003385

[…] e two separate user interfaces, customized for these pathways, are provided to facilitate data retrieval. On the same page (http://signalink.org/tools), SignaLink2 also provides two additional tools, PathwayLinker and SignaLog. PathwayLinker retrieves the first neighbor interaction network of the queried proteins and visualizes the pathways that involve the proteins in the retrieved network. Signa […]

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PathwayLinker institution(s)
Statistical and Biological Physics Research Group, Hungarian Academy of Sciences, Budapest, Hongria

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