Pattern locator specifications

Information


Unique identifier OMICS_15388
Name Pattern locator
Interface Web user interface
Restrictions to use None
Input data A DNA sequence.
Input format FASTA or GenBank
Output data Locations of the patterns found, the actual nucleotide sequences and their flanks, and overlapping patterns.
Programming languages C, Python
License GNU General Public License version 3.0
Computer skills Basic
Stability Stable
Source code URL http://www.cmbl.uga.edu/downloads/programs/Pattern_Locator/patloc.c
Maintained Yes

Maintainer


  • person_outline Jan Mrazek <>

Information


Unique identifier OMICS_15388
Name Pattern locator
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data A DNA sequence.
Input format FASTA or GenBank
Output data Locations of the patterns found, the actual nucleotide sequences and their flanks, and overlapping patterns.
Operating system Unix/Linux
Programming languages C, Python
License GNU General Public License version 3.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Jan Mrazek <>

Publication for Pattern locator

Pattern locator institution(s)
Department of Microbiology and Institute of Bioinformatics, Athens, GA, USA; Department of Computer Science, University of Georgia, Athens, GA, USA
Pattern locator funding source(s)
This work was supported in part by a Faculty Research Grant from the University of Georgia Research Foundation, Inc.

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