PatternBranching/ProfileBranching statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PatternBranching/ProfileBranching

Tool usage distribution map

This map represents all the scientific publications referring to PatternBranching/ProfileBranching per scientific context
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PatternBranching/ProfileBranching specifications


Unique identifier OMICS_21809
Name PatternBranching/ProfileBranching
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes


  • Pattern Branching
  • ProfileBranching




No version available


  • person_outline Alkes Price

Publication for PatternBranching/ProfileBranching

PatternBranching/ProfileBranching citations


Fine Needle Aspiration Cytology of the Breast: The Nonmalignant Categories

PMCID: 3108472
PMID: 21660275
DOI: 10.4061/2011/547580

[…] ground of smear is a reliable feature in favor of fibroadenoma []. There are aspirates which may show less pronounced antler horns but this may represent sample from fibroadenoma with pericanalicular pattern. Branching of epithelial sheets is more common if the aspirated sample is from an intracanalicular form (). The commonly encountered cytological features of fibroadenoma are fibromyxoid stroma […]


Molecular modeling and in silico characterization of Mycobacterium tuberculosis TlyA: Possible misannotation of this tubercle bacilli hemolysin

BMC Struct Biol
PMCID: 3072309
PMID: 21443791
DOI: 10.1186/1472-6807-11-16

[…] saA antigen sequences were included due to their sequence identity to M. tuberculosis TlyA (26.5%), sharing a common ancestor, although having experimentally-attributed different roles [,-] (Figure ).Pattern branching of the phylogenetic tree showed that the TlyA protein formed a monophyletic cluster with AdoMet RNA MTases, suggesting a common evolutionary origin; these findings might also imply a […]


Refining motifs by improving information content scores using neighborhood profile search

Algo Mol Biol
PMCID: 1687185
PMID: 17129371
DOI: 10.1186/1748-7188-1-23

[…] owever, is that consensus patterns are not as expressive of the DNA signal as profile representations. Recent approaches within this framework include Projection methods [,], string based methods [], Pattern-Branching [], MULTIPROFILER [] and other branch and bound approaches [,].A hybrid approach could potentially combine the expressiveness of the profile representation with convergence guarantee […]

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PatternBranching/ProfileBranching institution(s)
Department of Computer Science and Engineering, University of California at San Diego, La Jolla, CA, USA

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