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PASTA | Splice junction identification from RNA-sequencing data

A modular software pipeline for the analysis of RNA-Sequencing data. PASTA provides an innovative algorithm for the accurate, unbiased identification of splice junctions; automatic generation of gene models from junction information, both annotation-based or de novo; and estimation of relative expression changes of individual exons and junctions or entire isoforms.

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PASTA forum

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PASTA classification

PASTA specifications

Unique identifier:
OMICS_01247
Software type:
Pipeline/Workflow
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes
Name:
Patterned Alignments for Splicing and Transcriptome Analysis
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable

PASTA distribution

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No versioning.

Credits

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Publications

Institution(s)

Department of Molecular Genetics and Microbiology, College of Medicine, University of Florida, Gainesville, FL, USA

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