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|Interface||Web user interface|
|Restrictions to use||None|
- person_outline Jaroslav Koča
Publication for PatternQuery
Influence of Trp flipping on carbohydrate binding in lectins. An example on Aleuria aurantia lectin AAL
[…] e Trp side chain conformation found in these complexes. The PDB database was searched to find all binding sites with sugar ligands that are bound by CH-π stacking interaction with tryptophan. We used PatternQuery program for searching. The sugar ligand was defined as a ligand that contains a five or six membered ring with single bonds only, which contains one oxygen atom and four or five carbon […]
Zymophore identification enables the discovery of novel phenylalanine ammonia lyase enzymes
[…] ‘constellations’ for ene-reductase activity, use of BioGPS descriptors to aid discovery of promiscuous side-activity or the retrieval of catalytic residue arrangements via the Catalytic Site Atlas or PatternQuery,. Whilst these methods provide simple means of accessing proteins with desired catalytic activity, their use is mostly limited to structural databases containing only a fraction of the nu […]
The Eighth Central European Conference “Chemistry towards Biology”: Snapshot†
[…] PDBsum integrates ligand validation results from ValidatorDB and information about channels, precalculated via MOLE. Protein Data Bank Europe includes a Coordinate Server , which is based on PatternQuery and enables the user to extract predefined parts of the PDB entry (e.g., backbone, selected residues, etc.). […]
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