pbalign specifications

Information


Unique identifier OMICS_18565
Name pbalign
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input format FASTA,Base HDF5,Pulse HDF5,Circular Consensus Sequence (CCS) HDF5, file or file names (FOFN)
Output format SAM,Compare HDF5
Programming languages Perl, Python, Shell (Bash)
License BSD 3-clause “New” or “Revised” License
Computer skills Advanced
Stability Stable
Requirements pbcore, blasr, pls2fasta, samFilter, samtoh5, loadPulses, virtualenv, numpy, h5py
Maintained Yes

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Documentation


Maintainer


  • person_outline Pacific Biosciences <>

Additional information


https://github.com/PacificBiosciences/pbalign/wiki

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