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Citations per year

Number of citations per year for the bioinformatics software tool PBAP
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Protocols

PBAP specifications

Information


Unique identifier OMICS_10129
Name PBAP
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Programming languages Perl
Computer skills Advanced
Version 1.0
Stability Stable
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Wijsman E.M.

Publication for PBAP

PBAP citations

 (2)
library_books

Multipoint genome wide linkage scan for nonword repetition in a multigenerational family further supports chromosome 13q as a locus for verbal trait disorders

2016
Hum Genet
PMCID: 5065602
PMID: 27535846
DOI: 10.1007/s00439-016-1717-z

[…] he 1000 Genomes Project Consortium ) to determine linkage disequilibrium (LD) and minor allele frequencies (MAF) between markers for marker sub-selection.We used the pedigree based analysis pipeline (PBAP) to sub-select genetic markers for pedigree quality control (QC) and for interfacing with MORGAN (Thompson ) to calculate inheritance vectors (IV) used for linkage analysis (Nato et al. ). Use of […]

library_books

Genetic Candidate Variants in Two Multigenerational Families with Childhood Apraxia of Speech

2016
PLoS One
PMCID: 4847873
PMID: 27120335
DOI: 10.1371/journal.pone.0153864

[…] In Family A, MCMC linkage analysis using PBAP and MORGAN resulted in two regions of interest with peak LOD scores > 1 ( and Figs and ). With both grandparents coded as having unknown affectation status, a region of interest with LODmax = 2. […]


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PBAP institution(s)
Division of Medical Genetics, Department of Medicine, University of Washington, Seattle, WA, USA
PBAP funding source(s)
This work was supported by the National Institutes of Health (R01 MH092367, R01 MH094293, R01 AG039700, R37 GM046255, P50 AG005136 and U01 AG016976).

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