PBSIM specifications


Unique identifier OMICS_00253
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes



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Publication for PBSIM

PBSIM in publications

PMCID: 4582210
PMID: 26399998
DOI: 10.1186/1755-8794-8-S3-S5

[…] 10., long read correction quality. mixtar is conceived in order to work with both corrected and non-corrected long reads in the input. for our experiments we used long reads that were simulated with pbsim [] (on the first chromosome of c. elegans and on the philadelphia strain of l. pneumophila) or obtained with the pacbio sequencing technologies (for the 130b strain of l. pneumophila). […]

PMCID: 4161847
PMID: 25183223
DOI: 10.1186/1471-2105-15-296

[…] on the reference genomic sequences, and the numbers of alleles with unique target sequences for loci hla-a, b and drb1.table 2, the ccs reads for the target sequence of an allele were produced with pbsim [], which is the only simulator that generates pacbio libraries as far as we know. we adopted its model-based method and the default settings for ccs reads (length-mean=450, length-sd=170, […]

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PBSIM institution(s)
Information and Mathematical Science and Bioinformatics Co; Ltd; Toshima-ku, Tokyo, Japan

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