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PBSIM

PacBio sequencers produce two types of characteristic reads (continuous long reads: long and high error rate and circular consensus sequencing: short and low error rate), both of which could be useful for de novo assembly of genomes. Currently, there is no available simulator that targets the specific generation of PacBio libraries. PBSIM simulates those PacBio reads by using either a model-based or sampling-based simulation.

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PBSIM classification

PBSIM specifications

Software type:
Package/Module
Restrictions to use:
None
License:
GNU General Public License version 2.0
Stability:
Stable
Interface:
Command line interface
Operating system:
Unix/Linux
Computer skills:
Advanced
Maintained:
Yes

PBSIM distribution

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PBSIM support

Documentation

Credits

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Publications

Institution(s)

Information and Mathematical Science and Bioinformatics Co; Ltd; Toshima-ku, Tokyo, Japan

Link to literature

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