PBxplore specifications


Unique identifier OMICS_18198
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Reads PDB structure files48, PDBx/mmCIF structure files49, and MD trajectory formats from most MD engines.
Input format PDB
Output data Protein Blocks assignment, Protein Blocks frequency, Statistical analysis.
Output format FASTA
Operating system Unix/Linux, Mac OS, Windows
Programming languages Python
License MIT License
Computer skills Advanced
Version 1.3.6
Stability Stable
Requirements Numpy, Matplotlib, MDAnalysis
Source code URL https://codeload.github.com/pierrepo/PBxplore/tar.gz/v1.3.6
Maintained Yes



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  • person_outline Alexandre G. de Brevern <>
  • person_outline Pierre Poulain <>

PBxplore article

PBxplore institution(s)
INSERM, DSIMB, Paris, France; Univ. Paris Diderot, Sorbonne Paris Cite, UMR-S 1134, Paris, France; Institut National de la Transfusion Sanguine (INTS), Paris, France; Laboratoire d’Excellence GR-Ex, Paris, France; Groningen Biomolecular Sciences and Biotechnology Institute and Zernike Institute for Advanced Materials, University of Groningen, Groningen, Netherlands; The Scripps Research Institute, Department of Integrative Structural and Computational Biology, La Jolla, CA, USA; Birkbeck College, University of London, Malet Street, London, UK; INTS, Platelet Unit, Paris, France; Mitochondria, Metals and Oxidative Stress Group, Institut Jacques Monod, UMR 7592, Univ. Paris Diderot, CNRS, Sorbonne Paris Cite, Paris, France
PBxplore funding source(s)
Supported by grants from National Institute for Blood Transfusion (INTS, France) and Lab of Excellence GR-Ex from the Ministry of Research (France), University Paris Diderot, Sorbonne Paris Cite (France), National Institute for Health and Medical Research (INSERM, France), the program ”Investissements d’avenir” of the French National Research Agency, reference ANR-11-IDEX-0005-02 and Indo-French Centre for the Promotion of Advanced Research / CEFIPRA for collaborative grant (number 5302-2).

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