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Protocols

PC-Select specifications

Information


Unique identifier OMICS_11058
Name PC-Select
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements
FaST-LMM, GCTA
Maintained Yes

Versioning


No version available

Documentation


Maintainer


  • person_outline Bonnie Berger

Publication for PC-Select

PC-Select citations

 (3)
library_books

Learning Effective Connectivity Network Structure from fMRI Data Based on Artificial Immune Algorithm

2016
PLoS One
PMCID: 4821460
PMID: 27045295
DOI: 10.1371/journal.pone.0152600

[…]  Select and obtain a set of N ⋅ Ps antibodies with the higher K2 values (GS) by Ps;   Clone these selected antibodies, and form a copy set GSC;  4) Perform a crossover operator   For i = 1 to |GSC| ⋅ Pc    { Select two antibodies from GSC, and perform crossover operator;    Update GSC with new antibodies generated; }  5) Perform a mutation operator   For i = 1 to |GSC| ⋅ Pm    { Select an antibody […]

call_split

Iterative Usage of Fixed and Random Effect Models for Powerful and Efficient Genome Wide Association Studies

2016
PLoS Genet
PMCID: 4734661
PMID: 26828793
DOI: 10.1371/journal.pgen.1005767
call_split See protocol

[…] n between number of true QTNs and number of pseudo QTNs identified in FarmCPU model (). Second, we compared FarmCPU with the three methods that also use information from selected pseudo QTNs: MLMM[], PC Select[], and FaST-LMM-Select[]. The comparisons were performed on a simulated trait with heritability of 50% controlled by 100 QTNs. The FaST-LMM-Select and PC Select methods produced the same res […]

call_split

Semantic inference using chemogenomics data for drug discovery

2011
BMC Bioinformatics
PMCID: 3225082
PMID: 21699718
DOI: 10.1186/1471-2105-12-256
call_split See protocol

[…] plement this ranking process based on the inferred RDF. It counts the number of properties (?pc) related to each disease first, and then return disease terms (?dis) as descend order on the basis of (?pc).Select ?dis (count(?p) as ?pc)WHERE {?dis a wo:Disease; ?p ?o}GROUP BY ?dis ORDER BY DESC(?pc) […]

Citations

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PC-Select institution(s)
Department of Mathematics and Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA, USA; Department of Epidemiology and Department of Biostatistics, Harvard School of Public Health, Boston, MA, USA
PC-Select funding source(s)
This research was funded by National Institutes of Health grants R01 GM108348 and R01 HG006399.

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