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Associated diseases

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PC-TraFF specifications

Information


Unique identifier OMICS_21957
Name PC-TraFF
Alternative names Potentially Collaborating Transcription Factor finder, PC-TraFF_Professional
Interface Web user interface
Restrictions to use None
Input data A sequence set and a PWM library.
Output data A set of significant TFBS pairs.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainers


  • person_outline Mehmet Gultas <>
  • person_outline Cornelia Meckbach <>
  • person_outline Edgar Wingender <>

Additional information


http://pctraffpro.bioinf.med.uni-goettingen.de/newjob.php http://pctraffpro.bioinf.med.uni-goettingen.de/example.php

Publication for Potentially Collaborating Transcription Factor finder

PC-TraFF in publication

PMCID: 4804722
PMID: 27047536
DOI: 10.3389/fgene.2016.00033

[…] a refseq gene can have multiple overlapping promoter regions which results in overestimation of the importance of some transcription factor binding sites (tfbss). thus, following the line of pc-traff to remove the redundancy between sequences, we filtered them regarding their tsss (meckbach et al., ). consequently, we used in our analysis only those sequences which have no overlap., […]

PC-TraFF institution(s)
Institute of Bioinformatics, University of Göttingen, Göttingen, Germany; Institute of Computer Science, University of Göttingen, Göttingen, Germany

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