PCD-GED

Calculates a simple active threshold for each gene, based on its mean of expression profile. PCD-GED continues with generating a series of subnetworks of active proteins according to each column of gene expression matrix. It can find protein complexes in every subnetwork in two phases. It allows computation of the weighted clustering coefficient value for each protein.

PCD-GED specifications

Algorithm

Information

Unique identifier	OMICS_23145
Name	PCD-GED

Maintainer

This tool is not maintained anymore.

Publication for PCD-GED

PCD-GED: Protein complex detection considering PPI dynamics based on time series gene expression data.

2015 J Theor Biol

PMID: 25934349

DOI: 10.1016/j.jtbi.2015.04.020

PCD-GED institution(s)

Computer Engineering Department, Tarbiat Modares University, Tehran, Iran; Department of Biotechnology, College of Science, University of Tehran, Tehran, Iran

PCD-GED reviews

Be the first to review PCD-GED