PCM specifications


Unique identifier OMICS_33166
Name PCM
Alternative name Pairwise Comparative Modelling
Software type Application/Script
Interface Command line interface
Restrictions to use None
Input data A list of reference proteins sequences from a given family, the ARD structures of this family and a series of negative references.
Input format PDB
Operating system Unix/Linux
Programming languages Python, R, Shell (Bash)
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Etienne Ruppé <>
  • person_outline Amine Ghozlane <>

Publication for Pairwise Comparative Modelling

PCM institution(s)
MGP MetaGénoPolis, INRA, Université Paris-Saclay, Jouy en Josas, France; IAME, UMR 1137, INSERM, Paris Diderot University, Sorbonne Paris Cité, Paris, France; Institut Pasteur - Bioinformatics and Biostatistics Hub - C3BI, USR 3756 IP CNRS, Paris, France; Institut Pasteur - Biomics - CITECH, Paris, France; Centro Nacional de Biotecnología, CSIC, Madrid, Spain; Servicio de Microbiología Instituto, Ramón y Cajal de Investigación Sanitaria, Madrid, Spain; CIBER en Epidemiología y Salud Pública, Madrid, Spain; Unidad de Resistencia a Antibióticos y Virulencia Bacteriana, Madrid, Spain; Unit for Cystic Fibrosis, Ramon y Cajal University Hospital, Madrid, Spain; Internal Medicine Department, Beaujon Hospital, AP-HP, Clichy, France; Bacteriology Laboratory, Bichat-Claude Bernard Hospital, AP-HP, Paris, France; Department of Medical Microbiology, University Medical Center Utrecht, Utrecht, The Netherlands; Institute of Microbiology and Infection, University of Birmingham, Birmingham, UK; INSERM UMR_S 1134, Paris Diderot University, Sorbonne Paris Cité, Université de la Réunion, Université des Antilles, INTS, GR-Ex, Paris, France; Centre of Host Microbiome Interactions, King’s College, London, UK
PCM funding source(s)
Supported in part by the European Union Seventh Framework Programme (FP7-HEALTH-2011-single-stage) under grant agreement number 282004, EvoTAR, the European Development Regional Fund ‘A way to achieve Europe’ for co-founding the Spanish R&D National Plan 2012–2019 Work (PI15-0512), CIBER (CIBERESP; CB06/02/0053) and the Government of Madrid (InGeMICS- B2017/BMD-3691) and a Research Award Grant 2016 of the European Society for Clinical Microbiology and Infectious Diseases.

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