PconsC protocols

PconsC specifications

Information


Unique identifier OMICS_03522
Name PconsC
Software type Application/Script
Interface Graphical user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
Operating system Unix/Linux
License GNU General Public License version 2.0
Computer skills Medium
Stability Stable
Requirements h5py, Cython, Julie interpreter, Pyhton, CD-HIT
Maintained Yes

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Versioning


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Maintainer


  • person_outline Arne Elofsson <>

Additional information


PconsC2 is available https://github.com/ElofssonLab/web_pconsc2 PconsC3 is available at http://pconsc3.bioinfo.se/pred/ and PconsC4 is available at https://github.com/ElofssonLab/PconsC4

Information


Unique identifier OMICS_03522
Name PconsC
Interface Web user interface
Restrictions to use None
Input data An amino acid sequence.
Input format FASTA
License GNU General Public License version 3.0
Computer skills Basic
Version 3.0
Stability Stable
Maintained Yes

Maintainer


  • person_outline Arne Elofsson <>

Additional information


PconsC2 is available https://github.com/ElofssonLab/web_pconsc2 PconsC3 is available at http://pconsc3.bioinfo.se/pred/ and PconsC4 is available at https://github.com/ElofssonLab/PconsC4

Publications for PconsC

PconsC IN pipelines

 (2)
2017
PMCID: 5870574
PMID: 28881974
DOI: 10.1093/bioinformatics/btx239

[…] (38)union114 (35)558 (143)all6379 (558)6379 (558), in table 5, it can be seen that the average length of the successfully predicted models is shorter than for the average length of all models. the pconsc3 scores are also stronger, as expected. however the number of effective sequences and other properties are surprisingly not that different. table 5.<pconsc3 score>helixsheetcoil<meff […]

PconsC institution(s)
Science for Life Laboratory and Department of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden
PconsC funding source(s)
Supported by grants from the Swedish Research Council (VR-NT 2016-03798).

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