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Protocols

PCorral specifications

Information


Unique identifier OMICS_04856
Name PCorral
Alternative name Protein Corral
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained No

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Publication for Protein Corral

PCorral citations

 (3)
library_books

Generation of Silver Standard Concept Annotations from Biomedical Texts with Special Relevance to Phenotypes

2015
PLoS One
PMCID: 4301805
PMID: 25607983
DOI: 10.1371/journal.pone.0116040

[…] ubMed [] for the retrieval of Gene Ontology (GO) term relevant publications. Moreover, text mining tools can also help with the extraction of potentially relevant facts (information extraction), e.g. Protein Corral [] that allows a user to extract protein interactions from abstracts of scientific publications. Some of the information extraction tools support the mapping to database identifiers or […]

library_books

Gating the mechanical channel Piezo1

2012
PMCID: 3508907
PMID: 22790451
DOI: 10.4161/chan.21064

[…] els in the domain. Domain breakage is more likely with large and/or repetitive stimulation.,- The physical domain could be lipids such as a raft, or a more complicated structure such as a caveolus, a protein corral or the patch dome and seal. We can make some crude estimates of the domain size. We often measured patch currents from 50–100 channels so the domain is clearly smaller than the patch an […]

call_split

A realistic assessment of methods for extracting gene/protein interactions from free text

2009
BMC Bioinformatics
PMCID: 2723093
PMID: 19635172
DOI: 10.1186/1471-2105-10-233
call_split See protocol

[…] bsite. Of the wide range of text mining services on offer, here we focused exclusively on the protein interaction pipeline. (The core pipeline is available separately from Whatizit in the form of the Protein Corral web application []. However, Protein Corral is designed to perform Medline searches and does not accept text submitted by the user.) The pipeline begins by mapping gene/protein names to […]

Citations

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PCorral institution(s)
European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK

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