PDA specifications

Information


Unique identifier OMICS_13034
Name PDA
Alternative name Phylogenetic Diversity Analyzer
Interface Web user interface
Restrictions to use None
Input data Phylogenetic tree, split network, area
Input format NEWICK, NEXUS
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Basic
Version 0.5
Stability Beta
Maintained Yes

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Documentation


Maintainer


  • person_outline Bui Quang Minh <>

Information


Unique identifier OMICS_13034
Name PDA
Alternative name Phylogenetic Diversity Analyzer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data Phylogenetic tree, split network, information relevant for the conservation decision problem
Output data Optimal taxon or area sets, detailed information
Output format NEWICK, NEXUS
Operating system Unix/Linux, Mac OS, Windows
License GNU General Public License version 3.0, GNU General Public License version 2.0
Computer skills Advanced
Version 1.0.3
Stability Stable
Requirements Gurobi Optimizer
Source code URL http://www.cibiv.at/software/pda/download/pda-1.0.3/pda-1.0.3.tar.gz
Maintained Yes

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Versioning


Add your version

Documentation


Maintainer


  • person_outline Bui Quang Minh <>

Publication for Phylogenetic Diversity Analyzer

PDA institution(s)
Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories, University of Vienna, Medical University Vienna, Vienna, Austria; Bioinformatics and Computational Biology, Faculty of Computer Science, University of Vienna, Vienna, Austria; Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, UK; Department of Statistics, School of Biological Sciences, University of Auckland, Auckland, New Zealand; Department of Zoology, University of Otago, Dunedin, New Zealand; Theory and Applications of Algorithms, Faculty of Computer Science, University of Vienna, Vienna, Austria
PDA funding source(s)
This work was supported by the University of Vienna (Initiativkolleg I059-N), the Wiener Wissenschafts und Technologie Fond (WWTF) and the Austrian Science Fund - FWF (I760-B17).

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