PDBeFold protocols

PDBeFold specifications


Unique identifier OMICS_04210
Name PDBeFold
Interface Web user interface
Restrictions to use None
Computer skills Basic
Version 2.59
Stability Stable
Maintained Yes



  • person_outline Evgeny Krissinel <>

Publication for PDBeFold

PDBeFold IN pipelines

PMCID: 5131608
PMID: 27612581
DOI: 10.1016/j.jsb.2016.08.006

[…] and β1 in tt122238-123; β2 in tt121836-123 aligns with β1 in tt122238-123, and there is no equivalent of β4 from tt122238-123 in tt121836-123., we used the protein structure comparison service pdbefold at the european bioinformatics institute (krissinel and henrick, 2004), hhpred (soding et al., 2005) and dali (holm and rosenstrom, 2010) to search for pilins with similar folds (table 4). […]

PMCID: 3542185
PMID: 23326233
DOI: 10.1371/journal.ppat.1003117

[…] family [18], [22]. moreover, the structure of asps is different from pilotins of the type iii secretion system and the type iv pilus biogenesis system (supplementary figure s3). both dali and pdbefold servers identified p. aeruginosa protein pa3611 as the closest structural homolog to asps with an rmsd of 2.1 å for cα atoms and 18% sequence identity for 96 aligned residues (figure 6b) […]

PDBeFold institution(s)
European Bioinformatics Institute, Genome Campus, Hinxton, Cambridge, UK
PDBeFold funding source(s)
Supported by the research grant 721/B19544 from the Biotechnology and Biological Sciences Research Council (BBSRC) UK.

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