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PDBpaint specifications

Information


Unique identifier OMICS_13977
Name PDBpaint
Interface Application programming interface
Restrictions to use None
Input data A structure, A PDB or UniProt ID and the position to tag
Input format PDB
Output data Properties of the protein (from top to bottom, PDB code, name of protein, function of protein, species).
Programming languages Javascript, Perl
Computer skills Advanced
Stability Stable
Requirements
Java, Jmol program
Maintained Yes

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Maintainer


  • person_outline David Fournier <>

Publication for PDBpaint

PDBpaint in publication

PMCID: 3837014
PMID: 24278209
DOI: 10.1371/journal.pone.0079894

[…] it to protein sequences with structures in the protein data bank (see below). the results were validated by mapping the ard2 hits on the corresponding pdb structure for visual inspection using pdbpaint . positives were used to determine the precision and recall of each combination of parameters and training datasets., we selected the combination that had the best recall for a precision […]


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PDBpaint institution(s)
Max Delbrück Center for Molecular Medicine, Berlin, Germany
PDBpaint funding source(s)
This work was supported by the Collaborative Research Center for Theoretical Biology “Robustness, Modularity and Evolutionary Design of Living Systems” (Sonderforschungsbereich 618 (SFB 618)), and the Humboldt-University of Berlin, Germany

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