pDomTHREADER specifications

Information


Unique identifier OMICS_06090
Name pDomTHREADER
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline David Jones <>

Publication for pDomTHREADER

pDomTHREADER in publications

 (3)
PMCID: 4836724
PMID: 27093155
DOI: 10.1371/journal.ppat.1005574

[…] in order to obtain models of high quality, the structural relationships between the novel lts and previously solved protein structures were determined through fold recognition using pgenthreader and pdomthreader from the psipred server []. matching structures with the highest scores were then selected as templates for predicting structures of the novel lts. models for dnaj and obd-zn-atpase […]

PMCID: 4477481
PMID: 26157801
DOI: 10.3389/fmolb.2015.00032

[…] structure. the consensus of predicted secondary structure elements was used for structural modeling of the srd., to identify a suitable structural template for modeling the srd of iκbα, we used pdomthreader (lobley et al., ), a profile based recognition fold method incorporating domain superfamily discrimination, which distinguished 46 probable structural templates. we chose the fourth […]

PMCID: 4312913
PMID: 24602217
DOI: 10.1111/cmi.12288

[…] models were designed by the modeller (eswar et al., ) software package using multi-template modelling and additional restraints taken from the predicted secondary structure. pgenthreader and pdomthreader server (lobley et al., ) were used to identify proteins structurally related to the pplp2 sequence. missing regions of the full model including n- and c-terminal sites were generated […]


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pDomTHREADER institution(s)
Department of Computer Science, University College London, UK

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