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Number of citations per year for the bioinformatics software tool PE-MMR
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Protocols

PE-MMR specifications

Information


Unique identifier OMICS_14843
Name PE-MMR
Alternative name Post-Experiment Monoisotopic Mass Refinement
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Requirements
TPP, msconvert, Thermo Foundation, Xcalibrabur
Maintained Yes

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Maintainer


  • person_outline Sang-Won Lee

Publication for Post-Experiment Monoisotopic Mass Refinement

PE-MMR citations

 (3)
library_books

Characterization of developmental defects in the forebrain resulting from hyperactivated mTOR signaling by integrative analysis of transcriptomic and proteomic data

2017
Sci Rep
PMCID: 5460284
PMID: 28588230
DOI: 10.1038/s41598-017-02842-6

[…] mentary methods. To assign MS intensity to peptide identification, an MS intensity-based label-free quantification method was applied to 24 LC-MS/MS datasets as described previously. Briefly, through PE-MMR analysis, MS features of a peptide that appeared over a period of LC elution time in an LC-MS/MS experiment were grouped into a unique mass class (UMC). Ideally, each UMC corresponds to a pepti […]

call_split

Protein‐Induced Pluripotent Stem Cells Ameliorate Cognitive Dysfunction and Reduce Aβ Deposition in a Mouse Model of Alzheimer's Disease

2016
Stem Cells Transl Med
PMCID: 5442740
PMID: 28170178
DOI: 10.5966/sctm.2016-0081
call_split See protocol

[…] Monoisotopic masses of precursor ions in LC‐MS/MS data were refined by using post‐experiment monoisotopic mass refinement software before a database search . The resultant MS/MS data were searched against a composite target‐decoy database containing a mouse database (UniProt R […]

library_books

Alterations of tumor microenvironment by carbon monoxide impedes lung cancer growth

2016
Oncotarget
PMCID: 5029674
PMID: 26993595
DOI: 10.18632/oncotarget.8081

[…] The following antibodies were applied for staining: CD86-APC, CD197-PE, MMR-PE and CD68-APC macrophage markers (Biolegend, San Diego, CA). All antibodies were incubated with cells for half an hour at room temperature at 1:100 dilution. BD FACS Calibur (BD Biosciences, […]


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PE-MMR funding source(s)
This work was supported by 21C Frontier for Functional Proteomics Grant FPR05A1-400.

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