Peak identification software tools | Mass spectrometry-based untargeted metabolomics
The objective of this step is to identify and quantify the features present in the spectra. Peak-based methods are the most common algorithmic choice for featuredetection in MS-based studies, to detect the peaks across the spectrum and integrate their areas to provide a quantification of the underlying metabolite.
An LC/MS-based data analysis approach which incorporates novel nonlinear retention time alignment, feature detection, and feature matching. The XCMS software reads and processes LC/MS data stored in netcdf , mzXML, mzData and mzML files. It provides methods for feature detection, non-linear retention time alignment, visualization, relative quantization and statistics. XCMS is capable of simultaneously preprocessing, analyzing, and visualizing the raw data from hundreds of samples. XCMS is freely available under an open-source license.
Provides an application for daily routine and emergency toxicology. AMDIS is a software developed to identify of even low-abundant peaks in the total ion chromatograms (TIC) and the reduction of the evaluation time by half. This method first deconvolutes pure component spectra and related information such as peak shape and retention time from complex chromatograms and subsequently matches the obtained spectra with those of a reference library.
An open-source software tool for mass-spectrometry data processing, with the main focus on LC-MS data. It is based on the original MZmine toolbox described in the 2006 Bioinformatics publication, but has been completely redesigned and rewritten since then. Our main goal is to provide a user-friendly, flexible and easily extendable software with a complete set of modules covering the entire LC-MS data analysis workflow.
Aims to automatically integrates, precisely quantifies and interprets capillary electrophoresis-mass spectrometry (CE-MS) data. MasterHands is a metabolome analysis software that can also be used for comprehensive peak picking of capillary electrophoresis time-of-flight mass spectrometry (CE-TOF-MS) data. Users annotate whole peaks interactively through a graphical user interface. This data analysis application includes noise-filtering, baseline correction, peak detection and integration of the peak area from sliced electropherograms.
Allows peaks detection from high-resolution liquid-chromatography/mass-spectrometry (LC/MS) data. apLCMS is a machine learning approach designed for the processing of LC/MS based metabolomics data. The method learns directly from various data features of the extracted ion chromatograms (EICs) to differentiate between true peak regions from noise regions in the LC/MS profile. There are two major routes of data analysis: unsupervised analysis and hybrid analysis.
Assists users in identifying and quantifying small molecules by mass spectral deconvolution. MS-DIAL is able to deal with data independent acquisition tandem mass spectrometry (MS/MS) thanks by two step algorithms for spectral deconvolution. Moreover, it supports compound identification, peak alignment, and principal component analysis on the graphical user interface.