PeaKDEck specifications

Information


Unique identifier OMICS_02207
Name PeaKDEck
Software type Package/Module
Interface Command line interface, Graphical user interface
Restrictions to use None
Input data DNaseI-seq
Input format SAM
Output data Numerical sorting, Sam filter, Random read selection, Density analysis, Peak calling, Size ordering of peaks
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl
Computer skills Advanced
Version 1.1
Stability Stable
Maintained Yes

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Documentation


Information


Unique identifier OMICS_02207
Name PeaKDEck
Software type
Interface Graphical user interface
Restrictions to use None
Input data DNaseI-seq
Input format SAM
Output data Numerical sorting, Sam filter, Random read selection, Density analysis, Peak calling, Size ordering of peaks
Operating system Unix/Linux, Mac OS, Windows
Programming languages Perl, Other
Computer skills Medium
Version 1.1
Stability Stable

Download


Versioning


Add your version

Documentation


PeaKDEck article

PeaKDEck institution(s)
Wellcome Trust Centre for Human Genetics, Nuffield Department of Medicine, University of Oxford, Oxford, UK
PeaKDEck funding source(s)
Medical Research Council grants (MRC G0901998, MRC G116/165) and National Institute for Health Research Oxford Comprehensive Biomedical Research Centre (BRC) Program

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