Peakjuggler specifications


Unique identifier OMICS_21791
Name Peakjuggler
Alternative names IMP-apQuant, apQuant
Software type Application/Script
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Version 2.3
Stability Stable
Proteome Discoverer,
Maintained Yes


No version available



  • person_outline Karl Mechtler
  • person_outline Gerhard Dürnberger

Publication for Peakjuggler

Peakjuggler citations


Affinity proteomics reveals extensive phosphorylation of the Brassica chromosome axis protein ASY1 and a network of associated proteins at prophase I of meiosis

Plant J
PMCID: 5767750
PMID: 29078019
DOI: 10.1111/tpj.13752

[…] eptides. To obtain an indication of protein reliability, the raw data from all experiments were searched together and peptide/protein label‐free quantification was carried out using the in‐house tool peakjuggler (unpubl. data; Andersen et al., ), to determine peak area. Six of the nine data sets were obtained using three technical replicates of each sample, allowing the statistical significance of […]


A heterochromatin dependent transcription machinery drives piRNA expression

PMCID: 5590728
PMID: 28847004
DOI: 10.1038/nature23482
call_split See protocol

[…] e created MS/MS spectra were searched using MSAmanda v1.0.0.6186 against Drosophila melanogaster reference translations retrieved from Flybase (dmel_all-translation-r6.06). An in-house-developed tool Peakjuggler was used for the peptide and protein quantification (IMP/IMBA/GMI Protein Chemistry Facility; Using custom R scripts, average enrichment between bai […]

Peakjuggler institution(s)
Research Institute of Molecular Pathology (IMP), Vienna Biocenter (VBC), Campus-Vienna Biocenter, Vienna, Austria; Institute of Molecular Biotechnology of the Austrian Academy of Sciences (IMBA), Vienna Biocenter (VBC), Vienna, Austria; Gregor Mendel Institute of Molecular Plant Biology (GMI), Vienna Biocenter (VBC), Vienna, Austria
Peakjuggler funding source(s)
Supported by Boehringer Ingelheim and the Austrian Science Fund (FWF) for funding (grant numbers SFB F3411-B19, TRP 308-N15, I1469-B16).

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