Peakzilla specifications

Information


Unique identifier OMICS_00454
Software type Package/Module
Interface Command line interface
Restrictions to use None
Input data The coordinate files of the mapped reads of the IP and-optionally-control sample.
Input format BED
Output data The TFBSs including the genomic positions, raw, distribution and final score, FDR and a peak number according to each peak’s rank.
Output format BED
Operating system Unix/Linux, Mac OS
Programming languages Python
License GNU General Public License version 2.0
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainers


  • person_outline Alexander Stark <>
  • person_outline Jonas Steinmann <>

Peakzilla article

library_books

Identification of transcription factor binding sites from ChIP-seq data at high resolution.

2013 Bioinformatics
PMID: 23980024
DOI: 10.1093/bioinformatics/btt470
Peakzilla institution(s)
Research Institute of Molecular Pathology (IMP), Vienna, Austria; Institute of Molecular Biotechnology (IMBA), Vienna, Austria; Stowers Institute for Medical Research, Kansas City, MO, USA
Peakzilla funding source(s)
Supported by Austrian Ministry for Science and Research through the Genome Research in Austria (GEN-AU) BioinformaticsIntegration Network III; Austrian Research Fund (FWF) (Z_153_B09); NIH New Innovator (1DP2 OD004561-01, a Pew scholar); European Research Council (ERC) Starting Grant from the European Community’s Seventh Framework Programme (FP7/ 2007-2013)/ERC (242922) and Boehringer Ingelheim.

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