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Protocols

PEDB specifications

Information


Unique identifier OMICS_26825
Name PEDB
Alternative name Prostate Expression Database
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained No

Taxon


  • Primates
    • Homo sapiens

Maintainer


This tool is not available anymore.

Publications for Prostate Expression Database

PEDB citations

 (4)
library_books

Both IIC and IID Components of Mannose Phosphotransferase System Are Involved in the Specific Recognition between Immunity Protein PedB and Bacteriocin Receptor Complex

2016
PLoS One
PMCID: 5077127
PMID: 27776158
DOI: 10.1371/journal.pone.0164973

[…] icola, this gene could only provide immunity to leucocin A [], indicating that strain-specific factors may influence the function of immunity proteins. In this study, we co-expressed immunity protein PedB with receptor IICD from L. plantarum WQ0815, L. mesenteroides 05–43, L. salivarius REN or L. acidophilus 05–172 in the host W903. Our results showed that only the receptor from L. plantarum WQ081 […]

library_books

Functional Advantages of Conserved Intrinsic Disorder in RNA Binding Proteins

2015
PLoS One
PMCID: 4595337
PMID: 26439842
DOI: 10.1371/journal.pone.0139731

[…] Previously, we have developed DisCons [](available at http://pedb.vib.be/discons), a novel and freely accessible tool that serves two purposes: first, it provides a position-specific conservation score of protein disorder in the context of a multiple sequence a […]

library_books

Circadian Regulation of Myocardial Sarcomeric Titin cap (Tcap, Telethonin): Identification of Cardiac Clock Controlled Genes Using Open Access Bioinformatics Data

2014
PLoS One
PMCID: 4133362
PMID: 25121604
DOI: 10.1371/journal.pone.0104907

[…] nd BMAL1 E-box binding elements. Moreover we investigated whether these sequences were phylogenetically conserved between mouse and human, based on the circadian mammalian promoter enhancer database (PEDB, http://promoter.cdb.riken.jp/circadian/html) along with the European Bioinformatics Institute alignment tool (EMBOSS; www.ebi.ac.uk/Tools/psa/emboss_water/nucleotide.html) . The rationale for c […]

call_split

High resolution crystal structure of PedB: a structural basis for the classification of pediocin like immunity proteins

2007
BMC Struct Biol
PMCID: 1904221
PMID: 17537233
DOI: 10.1186/1472-6807-7-35
call_split See protocol

[…] PedB was expressed in E. coli and purified as described previously []. To ensure an anomalous signal in the X-ray diffraction experiment one leucine (Leu24) was mutated to methionine (L24M). For the s […]

Citations

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PEDB institution(s)
Division of Human Biology, Fred Hutchinson Cancer Research Center, Seattle, WA, USA; Division of Clinical Research, Fred Hutchinson Cancer Research Center, Seattle, WA, USA
PEDB funding source(s)
Supported by the CaPCURE Foundation and grants from the NCI (K08 CA75173-01A1), NIDDK (RO1 DK59125-02) and the USAMRMC Program in Prostate Cancer Research (DAMD17-98-1-8499).

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