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PEDIG specifications

Information


Unique identifier OMICS_18127
Name PEDIG
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Programming languages Fortran
Computer skills Advanced
Stability Stable
Maintained Yes

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Maintainer


  • person_outline Didier Boichard

PEDIG citations

 (40)
library_books

Founder specific inbreeding depression affects racing performance in Thoroughbred horses

2018
Sci Rep
PMCID: 5906619
PMID: 29670190
DOI: 10.1038/s41598-018-24663-x

[…] e EBV distributions over time in 10-year bins, which approximately represents one generation interval. We calculated the average generational interval to be 10.5 years using the intgen.f program from PEDIG. […]

library_books

Genomic evaluation of feed efficiency component traits in Duroc pigs using 80K, 650K and whole genome sequence variants

2018
PMCID: 5889553
PMID: 29625549
DOI: 10.1186/s12711-018-0387-9

[…] n GPPHD 80K SNP chip. A deep pedigree for these animals was traced back ~ 8 generations. The common ancestors and their genetic contribution to the studied population (1363) were calculated using the PEDIG program []. On the basis of “the proportion of genetic diversity” strategy, as suggested by Druet et al. [], the top 29 ancestors (22 boars and 7 sows) based on their genetic contributions to th […]

library_books

Age based partitioning of individual genomic inbreeding levels in Belgian Blue cattle

2017
PMCID: 5741860
PMID: 29273000
DOI: 10.1186/s12711-017-0370-x

[…] han homozygosity-based estimators). This trend was expected since FPED is estimated for a limited number of generations back in time. The average equivalent number of known generations estimated with PEDIG [] was 6.3 for the bulls born after 1999 (it increased from 5.5 for bulls born in 2000 to 7.5 for those born in 2010) corresponding on average to FG-16. The addition of HBD-class R k = 32 allows […]

library_books

Portable acuity screening for any school: validation of patched HOTV with amblyopic patients and Bangerter normals

2017
PMCID: 5716052
PMID: 29202721
DOI: 10.1186/s12886-017-0624-y

[…] Alaska Blind Child Discovery has received discounted vision screening technology from several vendors. Dr. Arnold is an investigator and protocol developer for PEDIG. No author or ABCD receives royalties from Precision Vision. […]

library_books

Identification of copy number variation in French dairy and beef breeds using next generation sequencing

2017
PMCID: 5655909
PMID: 29065859
DOI: 10.1186/s12711-017-0352-z

[…] [], 180 sires of the 200 sequenced animals were chosen based on their marginal contribution to their population based on pedigree information, as defined by Boichard et al. [], and computed using the PEDIG software []. Eighteen of the remaining 20 animals were sons of some of these 180 selected sires. In addition, two mothers of some of the 18 sons were chosen.Paired-end sequencing produced 71.51 […]

library_books

Rapid Discovery of De Novo Deleterious Mutations in Cattle Enhances the Value of Livestock as Model Species

2017
Sci Rep
PMCID: 5597596
PMID: 28904385
DOI: 10.1038/s41598-017-11523-3

[…] The expected number of affected animals was determined by analyzing the complete French Charolais pedigree (27 million animals) using the Pedig software. In a first step, all descendants of the bull “Invincible” were identified and his contribution to their gene pools calculated. Then, calves born from consanguineous matings were identi […]

Citations

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PEDIG institution(s)
Institut National de la Recherche Agronomique, UMR1313 Génétique Animale et Biologie Intégrative, Jouy en Josas, France

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