Allows users to perform population-based association studies. SFPCA can be applied to various types of genetic data and several types of family or unrelated-individual data. The software aims to enrich for rare risk or for protective variants by furnishing a way to include families in association studies. It was experimented on two datasets.
Provides clinical genetic services with a genetic patient management system. TrakGene provides several features such as (i) the customization of the front page to personalize user’s workflow, (ii) the build of custom reports with drag and drop report builder for fast reporting, (iii) the integration of pedigree chart drawing tool that permits users to capture family tree.
Handles family data with a pedigree object. Pedigree plotting features have been updated to display features on complex pedigrees while adhering to pedigree plotting standards. Kinship matrices can now be calculated for the X chromosome. Other methods have been added to subset and trim pedigrees while maintaining the pedigree structure.
A pedigree-drawing application with special features for easy visualization of complex haplotype information. HaploPainter has been developed to facilitate gene mapping in mendelian diseases in terms of fast and reliable definition of the smallest critical interval harbouring the underlying gene defect. Features like haplotype compression and the ability of marker section cut-out are particularly helpful for viewing large SNP-derived haplotypes.
Allows users to handle large and complex pedigrees with an emphasis on readability and aesthetics. Madeline includes a desktop version and a web version permitting researchers to create, display, save and print pedigrees. Moreover, it can convert pedigree and marker data into various formats required by linkage analysis software and also supply functionality for querying pedigree data sets interactively.
A Java API for the visual analysis of large and complex pedigrees. PedVizApi provides all the necessary functionality for the interactive exploration of extended genealogies. While available packages are mostly focused on a static representation or cannot be added to an existing application, PedVizApi is a highly flexible open source library for the efficient construction of visual-based applications for the analysis of family data.
Graphically displays genealogical data in 3D. Celestial3D employs specifically developed visualization techniques including layout algorithms that avoid screen clutter, and shadows that demarcate clades, so that extensive pedigrees are readily interpretable. The software allows to display multiple families in a unique spiral view. Use of 3D allows a greater number of individuals to be displayed in a given area, closely related individuals to be displayed spatially near each other and improved focus and context techniques.
Allows haplotype visualization and pedigree drawing. HaploForge is a comprehensive web application that draws pedigrees with a simple drag and drop interface and displays haplotypes underneath each individual, allowing for side-by side comparison, irrespective of generation. Drawn pedigrees are compliant with the Pedigree Standardization Work Group (PSWG) specification. The software is specifically designed for navigating high numbers of markers.
Provides a multi-criteria approach for monitoring endangered breeds based on subjective thresholds of a government agency. The GenMon application integrates different types of criteria, as pedigree data, genetic introgression, socio-economic and environmental aspects and geographical concentration of the breeds. This tool computes a global sustainability index for each breed, and making it possible to compare the endangerment level of several species and breeds.
Allows to visualize pedigree. Helium allows users to easily integrate a number of data types along with large plant pedigrees to offer an integrated environment in which they can explore pedigree data. It takes a string of genotypic data and identifies possible matches from data held in our Germinate database then display the possible hits on the pedigree display. The tool models pedigree as graph nodes to represent plant lines and edges to show mating/parentage.
Includes basic functions to manage genealogical data allowing, for example, extraction of a part of a genealogy or selection of specific individuals. There are also many functions providing information to describe the size and complexity of genealogies as well as functions to compute standard measures such as kinship, inbreeding and genetic contribution. GENLIB also includes functions for gene-dropping simulations. It provides a user friendly and flexible environment to analyze extensive genealogical data, allowing an efficient and easy integration of different types of data, analytical methods and additional developments and making this tool ideal for genealogical analysis.
Assists users in the production of a pedigree chart. f-treeGC allows users to edit a pedigree chart to visualize the larger chart with multiple displays. The users may select “Add comment,” right-click on the comment box, and then type the appropriate text. In summary, its interface enables users without specialized knowledge of clinical genetics and graphical skills to easily create medical pedigrees.