Pedimap statistics

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Associated diseases

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Pedimap specifications


Unique identifier OMICS_00214
Name Pedimap
Software type Package/Module
Interface Graphical user interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Medium
Stability Stable
Maintained Yes


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  • person_outline Roeland E. Voorrips <>

Publication for Pedimap

Pedimap in publications

PMCID: 5676184
PMID: 29138689
DOI: 10.1038/hortres.2017.62

[…] for genotyping with the axiom istraw90 snp array. genotypic data acquired from affymetrix, inc. was recoded with genomestudioconverter to convert it into the software input file format needed for pedimap version 1.2 and flexqtl version 099130. genetic positions of 10 560 filtered polyhighresolution and nominorhomozygous snp markers identified in bassil and davis et al. were obtained […]

PMCID: 5441909
PMID: 28338805
DOI: 10.1093/jxb/erx017

[…] of plant materials were employed. the first was represented by a pedigree composed of 13 parental lines and six full-sib populations (for a total of 416 individuals). the scheme generated with pedimap (; supplementary fig. s1; supplementary table s1 at jxb online) shows the maternal and paternal descendants from founders to progeny. the second group was represented by a collection of 387 […]

PMCID: 4688998
PMID: 26744627
DOI: 10.1038/hortres.2015.60

[…] parents of progenies in the training population (). the pedigree relationships among the parents and fs families of the training and application populations were abundant and were visualized with pedimap software as shown in ., phenotypic data for the training population were available from the hidras project and were partly described by kouassi et al. the individuals of the training […]

PMCID: 4608140
PMID: 26472667
DOI: 10.1186/s12864-015-1985-3

[…] best linear unbiased predictors (blup) were obtained as predictors of additive value of each individual at a given qtl. blups were plotted on the pedigree graph grouping all tested parents using pedimap software []., all linear mixed effect models were estimated by reml using the r-asreml package (butler et al., 2009) for r []., lrt thresholds used to determine the presence or absence […]

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Pedimap institution(s)
Wageningen University and Research Centre, Plant Breeding, Wageningen, Netherlands

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