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Pegasus specifications

Information


Unique identifier OMICS_16784
Name Pegasus
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
License Apache License version 2.0
Computer skills Advanced
Version 4.7.4
Stability Stable
Requirements
Java
Maintained Yes

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Maintainer


  • person_outline Ewa Deelman <>

Publications for Pegasus

Pegasus in publications

 (6)
PMCID: 5361107
PMID: 28381997
DOI: 10.3389/fninf.2017.00021

[…] et al., ) was one of the first general-purpose scientific workflow systems, recognizing the need for transparent and simplified access to high performance computing platforms more than a decade ago. pegasus (deelman et al., ) is a system that initially gained popularity for mapping complex workflows to resources resources in distributed environments without requiring input from the user., psom […]

PMCID: 5437943
PMID: 28327945
DOI: 10.1093/gigascience/gix015

[…] this, gui-enabled software for automating pipeline development improves the reproducibility, accessibility, and transparency of running genomic analyses []. examples include galaxy [], taverna [], pegasus [], and commercial software packages such as geneious []. in particular, the galaxy project offers many attractive features for this goal while remaining open-source. namely, galaxy boasts […]

PMCID: 5429012
PMID: 27013646
DOI: 10.1093/bib/bbw020

[…] a target naming scheme (). figure 4, many pipeline frameworks dispense with inline scripting code and instead use a configuration-based, rather than convention-based, means of describing tasks. pegasus [] is a national science foundation (nsf)-funded workflow system originally designed for the physical sciences. like all configuration-based frameworks, pegasus is explicit—it […]

PMCID: 3655485
PMID: 23710461
DOI: 10.1155/2013/791051

[…] and execution of sophisticated workflows. examples of the systems that support sequence analysis applications include, among others, taverna [, ], kepler [], triana [, ], galaxy [], conveyor [] pegasus [], and pegasys []. in these systems, the workflows are represented in the form of a directed graph, where nodes represent tasks to be executed and edges represent either data flow […]

PMCID: 3496580
PMID: 22788675
DOI: 10.1186/1471-2105-13-163

[…] but also for those who want to consolidate open and cooperative systems [,]., an additional level of flexibility may be achieved by workflow management systems such as taverna [], galaxy [] and pegasus [] that are well suited for analysis tasks that are systematically repeated without changes in the course of execution, such as genome annotation [,] and the tasks registered […]


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Pegasus institution(s)
University of Southern California, Information Sciences Institute, Marina del Rey, CA, USA; University of Southern California, Los Angeles, CA, USA; University of Wisconsin at Madison, Madison, WI, USA
Pegasus funding source(s)
Supported by The National Science Foundation under the ACI SDCI program grant #0722019 and ACI SI2-SSI program grant #1148515.

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