Pegasus statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool Pegasus
info

Tool usage distribution map

info info

Associated diseases

info

Popular tool citations

chevron_left Workflow management systems chevron_right
Want to access the full stats & trends on this tool?

Protocols

Pegasus specifications

Information


Unique identifier OMICS_16784
Name Pegasus
Software type Framework/Library
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux, Mac OS
Programming languages Python
License Apache License version 2.0
Computer skills Advanced
Version 4.7.4
Stability Stable
Requirements
Java
Maintained Yes

Download


download.png

Versioning


No version available

Documentation


Maintainer


  • person_outline Ewa Deelman

Publications for Pegasus

Pegasus citations

 (10)
library_books

Reproducible Large Scale Neuroimaging Studies with the OpenMOLE Workflow Management System

2017
Front Neuroinform
PMCID: 5361107
PMID: 28381997
DOI: 10.3389/fninf.2017.00021

[…] et al., ) was one of the first general-purpose scientific workflow systems, recognizing the need for transparent and simplified access to high performance computing platforms more than a decade ago. Pegasus (Deelman et al., ) is a system that initially gained popularity for mapping complex workflows to resources resources in distributed environments without requiring input from the user.PSOM (Pip […]

library_books

Enhancing knowledge discovery from cancer genomics data with Galaxy

2017
GigaScience
PMCID: 5437943
PMID: 28327945
DOI: 10.1093/gigascience/gix015

[…] me this, GUI-enabled software for automating pipeline development improves the reproducibility, accessibility, and transparency of running genomic analyses []. Examples include Galaxy [], Taverna [], Pegasus [], and commercial software packages such as Geneious []. In particular, the Galaxy project offers many attractive features for this goal while remaining open-source. Namely, Galaxy boasts ext […]

library_books

Dynamic Voltage Frequency Scaling Simulator for Real Workflows Energy Aware Management in Green Cloud Computing

2017
PLoS One
PMCID: 5234838
PMID: 28085932
DOI: 10.1371/journal.pone.0169803

[…] re small tasks on large jobs are linked to reduce overloads. Further, it allows experiments with real workflows described in DAX format or Directed Acyclic Graphs (DAGs) in XML format [], used by the Pegasus system [] workflows in a way that new scheduling algorithms can be validated in realistic scenarios. WorkflowSim also allows mechanisms for fault simulation in task execution and moreover, it […]

call_split

PGen: large scale genomic variations analysis workflow and browser in SoyKB

2016
BMC Bioinformatics
PMCID: 5074001
PMID: 27766951
DOI: 10.1186/s12859-016-1227-y
call_split See protocol

[…] G. Max Williams 82 Wm82.a2.v1 version [] available via Phytozome [] was used as the reference genome for this analysis. We built the PGen multi-step workflow using the Pegasus [] workflow management system (Pegasus-WMS) as shown in Fig. , using many widely accepted open-source NGS tools for quality checks, alignment of reads, variants calling, variants filtration, v […]

library_books

OSG GEM: Gene Expression Matrix Construction Using the Open Science Grid

2016
Bioinform Biol Insights
PMCID: 4972127
PMID: 27499617
DOI: 10.4137/BBI.S38193

[…] uantities of short sequences from HTS are processed. The GEM workflow developed for the OSG may be modified to enable transfer of any HTC systems, including a local campus cluster, grid, or cloud.The Pegasus Workflow Management System enables the execution of large-scale computational workflows on a variety of infrastructures. Pegasus workflows are described as abstract directed acyclic graphs (DA […]

library_books

Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing

2016
BMC Genomics
PMCID: 4752768
PMID: 26872939
DOI: 10.1186/s12864-016-2431-x

[…] tic NGS resequencing data analysis workflow [] developed in SoyKB for SNP and Indel calling. XSEDE [] was used as the computing infrastructure, iPlant as the data and cloud infrastructure [], and the Pegasus workflow systems [] to control and coordinate the data management and computational tasks. […]


Want to access the full list of citations?
Pegasus institution(s)
University of Southern California, Information Sciences Institute, Marina del Rey, CA, USA; University of Southern California, Los Angeles, CA, USA; University of Wisconsin at Madison, Madison, WI, USA
Pegasus funding source(s)
Supported by The National Science Foundation under the ACI SDCI program grant #0722019 and ACI SI2-SSI program grant #1148515.

Pegasus reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review Pegasus