PEMer statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PEMer

Tool usage distribution map

This map represents all the scientific publications referring to PEMer per scientific context
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Associated diseases


Popular tool citations

chevron_left Structural variant detection Deletion detection Insertion detection Inversion detection chevron_right
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PEMer specifications


Unique identifier OMICS_00320
Name PEMer
Software type Package/Module
Interface Command line interface
Restrictions to use Academic or non-commercial use
Input format FASTA
Operating system Unix/Linux
Programming languages Perl, Python
Computer skills Advanced
Stability Stable
Maintained Yes


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Publication for PEMer

PEMer citations


An alternative to hydrogenation processes. Electrocatalytic hydrogenation of benzophenone

Beilstein J Org Chem
PMCID: 5852634
PMID: 29623115
DOI: 10.3762/bjoc.14.40

[…] (vide supra).Electrosynthesis reactions were performed using a 25 cm2 PEM single cell fuel cell (EFC-25-01 model from ElectroChem Inc.) acting as polymer electrolyte membrane electrochemical reactor (PEMER), as depicted in . Such an electrochemical reactor consisted of (i) a Pdx/C/T cathode, (ii) an ETEK gas diffusion-type EFGC (Pt/C/T) with a 40 wt % of Pt with respect to the amount of carbon, an […]


Altools: a user friendly NGS data analyser

Biol Direct
PMCID: 4756442
PMID: 26883204
DOI: 10.1186/s13062-016-0110-0

[…] ing approaches []. Alternatively, splitting each read into two portions can identify reads spanning the deleted segment (e.g. the deletion breakpoints) []. Tools such as Pindel [], Breakdancer [] and PEMer [] rely on such strategies to identify large deletions, and must deal with the compromise between speed and the accuracy of breakpoint detection. Inferring the deletion coordinates from the dist […]


Performance evaluation of indel calling tools using real short read data

Hum Genomics
PMCID: 4545535
PMID: 26286629
DOI: 10.1186/s40246-015-0042-2

[…] aired-end read mapping methods compare the expected distance to the actual mapped distance to determine whether there is any indel in the sequence (Fig.  ()). Tools belonging to this category include PEMer [], Hydra [], and BreakDancer []. Haplotype-based methods first identify the regions of interest where the reads show substantial evidence of having indels relative to the reference sequence. Th […]


Next generation sequencing in cancer research and clinical application

PMCID: 3599179
PMID: 23406336
DOI: 10.1186/1480-9222-15-4

[…] f the mutations on gene function and to distinguish between driver and passenger mutations. For WGS, various kinds of structural variations can be discovered using BreakDancer [], VariationHunter [], PEMer [] and SVDetect []. RNA-seq data analysis generally includes reads alignment, gene expression quantification, differentially expressed genes/isoforms or alternative splicing detection and novel […]

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PEMer institution(s)
Gene Expression Unit, European Molecular Biology Laboratory (EMBL), Meyerhofstr, Heidelberg, Germany

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