PennCNV protocols

PennCNV specifications


Unique identifier OMICS_00729
Name PennCNV
Software type Application/Script
Interface Command line interface
Restrictions to use None
Biological technology Illumina, Affymetrix
Operating system Unix/Linux
Programming languages C, Perl
Computer skills Advanced
Stability Stable
Maintained Yes



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  • person_outline Kai Wang <>

Additional information

Publications for PennCNV

PennCNV IN pipeline

PMCID: 5824808
PMID: 29476056
DOI: 10.1038/s41467-017-02621-x

[…] pass the quality control (0/1 column in supplementary data 1) and were excluded from further analysis. logr values were corrected for gc content bias using the genomic wave correction tool of the penncnv software suite41., the bioinformatics procedures and statistical tools to analyze the data are described in more detail in the supplementary methods (supplementary figs. 60–83, supplementary […]

PennCNV institution(s)
Department of Genetics, University of Pennsylvania, Philadelphia, PA, USA; Center for Applied Genomics and Division of Human Genetics, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA; Department of Biostatistics and Epidemiology, University of Pennsylvania, Philadelphia, PA, USA; Department of Mathematics, Georgetown University, Washington DC, USA
PennCNV funding source(s)
Supported by NARSAD Distinguished Investigator Award; University Research Foundation grant, McCabe Pilot Award from the University of Pennsylvania; National Institute of Health (grant R01HG004517), an Institute Development Award to the Center for Applied Genomics from the Children’s Hospital of Philadelphia.

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