PennCNV specifications
Information
| Unique identifier | OMICS_00729 |
|---|---|
| Name | PennCNV |
| Software type | Application/Script |
| Interface | Command line interface |
| Restrictions to use | None |
| Biological technology | Illumina, Affymetrix |
| Operating system | Unix/Linux |
| Programming languages | C, Perl |
| Computer skills | Advanced |
| Stability | Stable |
| Maintained | Yes |
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Documentation
Maintainer
- person_outline Kai Wang <>
Additional information
http://penncnv.openbioinformatics.org/en/latest/
PennCNV articles
library_books
Adjustment of genomic waves in signal intensities from whole-genome SNP genotyping platforms.
2008 Nucleic Acids Res
PMID: 18784189
DOI: 10.1093/nar/gkn556
library_books
Modeling genetic inheritance of copy number variations.
2008 Nucleic Acids Res
PMID: 18832372
DOI: 10.1093/nar/gkn641
2007 Genome Res
PMID: 17921354
DOI: 10.1101/gr.6861907
PennCNV citation
library_books
Evolution of Barrett’s esophagus through space and time at single-crypt and whole-biopsy levels
2018
PMCID: 5824808
[…] pass the quality control (0/1 column in supplementary data 1) and were excluded from further analysis. logr values were corrected for gc content bias using the genomic wave correction tool of the penncnv software suite41., the bioinformatics procedures and statistical tools to analyze the data are described in more detail in the supplementary methods (supplementary figs. 60–83, supplementary […]
PennCNV institution(s)
Department of Genetics, University of Pennsylvania, Philadelphia, PA, USA; Center for Applied Genomics and Division of Human Genetics, The Children’s Hospital of Philadelphia, Philadelphia, PA, USA; Department of Biostatistics and Epidemiology, University of Pennsylvania, Philadelphia, PA, USA; Department of Mathematics, Georgetown University, Washington DC, USA
PennCNV funding source(s)
Supported by NARSAD Distinguished Investigator Award; University Research Foundation grant, McCabe Pilot Award from the University of Pennsylvania; National Institute of Health (grant R01HG004517), an Institute Development Award to the Center for Applied Genomics from the Children’s Hospital of Philadelphia.
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