Main logo
?
tutorial arrow
×
Create your own tool library
Bookmark tools and put favorites into folders to find them easily.

PennSeq |Isoform-specific gene expression quantification in RNA-Seq by modeling non-uniform read distribution

Allows users to evaluate isoform-specific gene expression. PennSeq is a standalone software that assists users by offering a statistical method based on a non-parametric approach. The application is able to attribute a non-uniform read distribution to each isoform and demonstrates accuracy especially for those who display a severe non-uniformity. The application was evaluated on both simulated and real RNA-Seq data.

User report

tutorial arrow
×
Vote up tools and offer feedback
Give value to tools and make your expertise visible
Give your feedback on this tool
Sign up for free to join and share with the community

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

0 user reviews

star_border star_border star_border star_border star_border
star star star star star

No review has been posted.

PennSeq forum

tutorial arrow
×
Communicate with other users
Participate in the forum to get support for using tools. Ask questions about technical specifications.
Take part in the discussion
Sign up for free to ask question and share your advices

No open topic.

PennSeq classification

PennSeq specifications

Unique identifier:
OMICS_01946
Interface:
Command line interface
Operating system:
Unix/Linux
Stability:
Stable
Software type:
Application/Script
Restrictions to use:
None
Computer skills:
Advanced
Maintained:
Yes

PennSeq distribution

versioning

tutorial arrow
×
Upload and version your source code
Get a DOI for each update to improve tool traceability. Archive your releases so the community can easily visualize progress on your work.
Facilitate your tool traceability
Sign up for free to upload your code and get a DOI

No versioning.

PennSeq support

Maintainer

  • Mingyao Li <>

Credits

tutorial arrow
×
Promote your skills
Define all the tasks you managed and assign your profile the appropriate badges. Become an active member.
Promote your work
Sign up for free to badge your contributorship

Publications

Institution(s)

Department of Biostatistics and Epidemiology, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA; Cardiovascular Institute, University of Pennsylvania Perelman School of Medicine, Philadelphia, PA, USA

Funding source(s)

Fundings National Institutes of Health [R01HG004517, R01HG005854, R01GM097505 and R01HL111694; R01GM097505; R01HL111694, R01DK090505, U01HL108636 and K24HL107643] and. The Penn Genome Frontiers Institute under a grant with the Pennsylvania Department of Health.

By using OMICtools you acknowledge that you have read and accepted the terms of the end user license agreement.