PEP_scaffolder specifications


Unique identifier OMICS_12212
Name PEP_scaffolder
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No


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Publication for PEP_scaffolder

PEP_scaffolder citation


Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus

PMCID: 5905561
PMID: 29444297
DOI: 10.1093/gigascience/giy006

[…] mation of homolog proteins, which includes Agrilus planipennis [], Anoplophora glabripennis [], Dendroctonus ponderosae [], Onthophagus taurus [], and Tribolium castaneum [], to construct scaffold by PEP_scaffolder []. We used GapCloser (RRID:SCR_015026) [] to carry out gap filling. The final assembly of the H. cichorii genome had a total length of 111.7 Mb and a scaffold N50 length of 79.3 kb. Th […]

PEP_scaffolder institution(s)
College of Fisheries and Life Science, Shanghai Ocean University, Shanghai, China; Centre for Applied Aquatic Genomics, Chinese Academy of Fishery Sciences, Beijing, China; College of Marine Science, Zhejiang Ocean University, Zhoushan, China
PEP_scaffolder funding source(s)
This study was supported by National Natural Science Foundation of China (31402353).

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