PEP-SiteFinder specifications

Unique identifier:
OMICS_05697
Restrictions to use:
None
Input format:
PDB, FASTA
Output format:
PDB
Version:
1.0
Maintained:
Yes
Interface:
Web user interface
Input data:
The structure of the protein in interaction with the peptide and the amino acid sequence of the peptide interacting with the protein.
Output data:
An interactive page allowing to browse the 3D structure of the best complexes generated, files corresponding to the protein with the interaction propensities set in the temperature factor field and to the peptide poses, with a PyMOL script to drive and file listing the propensities per residue.
Computer skills:
Basic
Stability:
Stable

PEP-SiteFinder support

Maintainer

  • Pierre Tufféry <>

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Publications

Institution(s)

INSERM U973, MTi, Paris, France; Université Paris Diderot, Sorbonne Paris Cité, Paris, France; Ressource Parisienne en Bioinformatique Structurale, Paris, France; Technische Universität München, München, Germany

Funding source(s)

Supported by French IA bioinformatics BipBip grant; INSERM UMR-S and Ressource Parisienne en Bioinformatique Structurale.

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