PEP-SiteFinder specifications


Unique identifier OMICS_05697
Name PEP-SiteFinder
Interface Web user interface
Restrictions to use None
Input data The structure of the protein in interaction with the peptide and the amino acid sequence of the peptide interacting with the protein.
Input format PDB, FASTA
Output data An interactive page allowing to browse the 3D structure of the best complexes generated, files corresponding to the protein with the interaction propensities set in the temperature factor field and to the peptide poses, with a PyMOL script to drive and file listing the propensities per residue.
Output format PDB
Computer skills Basic
Version 1.0
Stability Stable
Maintained Yes


  • person_outline Pierre Tufféry <>

Publication for PEP-SiteFinder

PEP-SiteFinder institution(s)
INSERM U973, MTi, Paris, France; Université Paris Diderot, Sorbonne Paris Cité, Paris, France; Ressource Parisienne en Bioinformatique Structurale, Paris, France; Technische Universität München, München, Germany
PEP-SiteFinder funding source(s)
Supported by French IA bioinformatics BipBip grant; INSERM UMR-S and Ressource Parisienne en Bioinformatique Structurale.

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