PepBase specifications

Information


Unique identifier OMICS_22113
Name PepBase
Restrictions to use None
Community driven No
Data access Browse
User data submission Not allowed
Maintained Yes

Maintainer


  • person_outline Rintaro Saito

Publication for PepBase

PepBase citation

library_books

Functional phosphoproteomic profiling of phosphorylation sites in membrane fractions of salt stressed Arabidopsis thaliana

2009
Proteome Sci
PMCID: 2778640
PMID: 19900291
DOI: 10.1186/1477-5956-7-42

[…] embrane domains. To discover if phosphorylation sites had been previously identified, sites were compared to results from PhosphoPhat http://phosphat.mpimp-golm.mpg.de/, P3DB http://www.p3db.org/ and PepBase http://pepbase.iab.keio.ac.jp/phospho/msb/[-].Protein sequence alignment was performed using ClustalW software to align phosphoprylation sites http://align.genome.jp/. Amino acid sequences of […]

PepBase institution(s)
Institute for Advanced Biosciences, Keio University, Tsuruoka, Japan; Systems Biology Program, Graduate School of Media and Governance, Keio University, Fujisawa, Japan; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA; Systems Biology Program, Faculty of Environment and Information Studies, Keio University, Fujisawa, Japan; PRESTO, Japan Science and Technology Agency, Tokyo, Japan
PepBase funding source(s)
Supported by research funds from Yamagata Prefecture and Tsuruoka City to Keio University; by a generous grant from the Naito Foundation; and by a Grant-in-Aid for JSPS fellows from the Japan Society for the Promotion of Science (JSPS) (1924).

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