- Unique identifier:
- Restrictions to use:
- Output data:
- A web page which includes a main table with a list of representative scaffolds, the designed peptide sequences, the average FoldX binding energy, a sequence logo, a radio button to display the list of peptides obtained from the same backbone and the complex structure of the representative one in a jsmol window, a button to download the coordinates of the latter complex in PDB format
- Computer skills:
- Web user interface
- Input data:
- PDB file of the target protein, an approximate definition of the desired binding site, PDB ID, optional email address
- Programming languages:
- Perl, PHP, Python
- Rosalba Lepore <>
No open topic.
(Obarska-Kosinska et al., 2016)
PepComposer: computational design of peptides binding to a given protein surface.
Nucleic Acids Res.
PMID: 27131789 DOI: 10.1093/nar/gkw366
Department of Physics, Sapienza University, Piazzale Aldo Moro, Rome, Italy; Istituto Pasteur-Fondazione Cenci Bolognetti, Rome, Italy
Epigenomics Flagship Project (EPIGEN); KAUST [KUK-I1-012-43]