PepComposer specifications

Unique identifier:
OMICS_13714
Restrictions to use:
None
Output data:
A web page which includes a main table with a list of representative scaffolds, the designed peptide sequences, the average FoldX binding energy, a sequence logo, a radio button to display the list of peptides obtained from the same backbone and the complex structure of the representative one in a jsmol window, a button to download the coordinates of the latter complex in PDB format
Computer skills:
Basic
Maintained:
Yes
Interface:
Web user interface
Input data:
PDB file of the target protein, an approximate definition of the desired binding site, PDB ID, optional email address
Programming languages:
Perl, PHP, Python
Stability:
Stable

PepComposer support

Documentation

Maintainer

  • Rosalba Lepore <>

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Publications

Institution(s)

Department of Physics, Sapienza University, Piazzale Aldo Moro, Rome, Italy; Istituto Pasteur-Fondazione Cenci Bolognetti, Rome, Italy

Funding source(s)

Epigenomics Flagship Project (EPIGEN); KAUST [KUK-I1-012-43]

User review

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1 user review

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Alfredo Iacoangeli

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great tool! takes a little while to generate outputs (about a day + queueing time) but interesting results. please note that 8-10 residues are needed to find good structural matches when looking for binding regions

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