PepComposer specifications

Information


Unique identifier OMICS_13714
Name PepComposer
Interface Web user interface
Restrictions to use None
Input data PDB file of the target protein, an approximate definition of the desired binding site, PDB ID, optional email address
Output data A web page which includes a main table with a list of representative scaffolds, the designed peptide sequences, the average FoldX binding energy, a sequence logo, a radio button to display the list of peptides obtained from the same backbone and the complex structure of the representative one in a jsmol window, a button to download the coordinates of the latter complex in PDB format
Programming languages Perl, PHP, Python
Computer skills Basic
Stability Stable
Maintained Yes

Documentation


Maintainer


  • person_outline Rosalba Lepore <>

PepComposer article

PepComposer institution(s)
Department of Physics, Sapienza University, Piazzale Aldo Moro, Rome, Italy; Istituto Pasteur-Fondazione Cenci Bolognetti, Rome, Italy
PepComposer funding source(s)
Epigenomics Flagship Project (EPIGEN); KAUST [KUK-I1-012-43]

PepComposer review

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Alfredo Iacoangeli

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Web
great tool! takes a little while to generate outputs (about a day + queueing time) but interesting results. please note that 8-10 residues are needed to find good structural matches when looking for binding regions

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