PepDistiller specifications

Information


Unique identifier OMICS_02522
Name PepDistiller
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for PepDistiller

PepDistiller in publications

 (3)
PMCID: 5374549
PMID: 28361671
DOI: 10.1186/s12864-017-3491-2

[…] as well as four quality control methods in term of quantity and quality aspects. our results showed that the latest developed search engine ms-gf+ and percolator-embeded quality control method pepdistiller performed best in all tools respectively. combined with efficient quality control methods, the search engines can improve the low sensitivity of their original scores. moreover, based […]

PMCID: 4890429
PMID: 27250251
DOI: 10.1038/srep27094

[…] carboxamidomethyl cysteine and oxidized methionine were set as fixed and variable modifications, respectively. the false discovery rate (fdr) was determined by using a target-decoy search strategy. pepdistiller, which facilitates the sensitive and accurate validation of mascot search results, was used to validate ms/ms-based peptides and the peptide fdr was controlled at 1.0%. a label-free […]

PMCID: 4510141
PMID: 26217742
DOI: 10.1016/j.dib.2015.02.023

[…] carboxamidomethyl cysteine and oxidized methionine were set as fixed and variable modifications, respectively. the false discovery rate (fdr) was determined by using a target-decoy search strategy . pepdistiller , which facilitates the sensitive and accurate validation of mascot search results, was used to validate ms/ms-based peptides and the peptide fdr was controlled at 1.0%. a spectral count […]


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PepDistiller institution(s)
State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, Beijing, China

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