PepExplorer statistics

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PepExplorer specifications

Information


Unique identifier OMICS_05393
Name PepExplorer
Software type Package/Module
Interface Command line interface
Restrictions to use None
Operating system Windows
Computer skills Advanced
Stability Stable
Maintained Yes

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Publication for PepExplorer

PepExplorer in publications

 (3)
PMCID: 5505115
PMID: 28696408
DOI: 10.1038/sdata.2017.90

[…] de novo sequencing of amino-acid stretches far longer than those handled by the conventional approach. once high-confidence de novo data are available, it becomes possible to employ tools, such as pepexplorer or meta-sps, that apply pattern recognition approaches to the mapping of de novo sequencing data against sequences from homologous organisms, thereby facilitating biological […]

PMCID: 5086652
PMID: 27754342
DOI: 10.3390/toxins8100292

[…] tolerance. only de novo sequences showing ≥99% alc (average of local confidence) were exported and submitted to sequence alignment against the mature blatpii-c clone sequence using the algorithm pepexplorer []. the following parameters were used in the similarity-driven analysis: 75% minimum identity, minimum of 6 residues per peptide, substitution matrix pam30ms., the fractions obtained […]

PMCID: 3898217
PMID: 24423259
DOI: 10.1186/1756-3305-7-23

[…] that did not yield any psm according to peaks db but had high scoring de novo results were submitted to a similarity-driven search against the full ncbinr database using an in-house tool called pepexplorer. this tool is currently under development in the laboratory for proteomics and protein engineering (icc-fiocruz, brazil). briefly, it relies on the smith-waterman algorithm [], the peaks […]


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