PepLine statistics

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Citations per year

Number of citations per year for the bioinformatics software tool PepLine
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Tool usage distribution map

This map represents all the scientific publications referring to PepLine per scientific context
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PepLine specifications

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Unique identifier OMICS_06914
Name PepLine
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No

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Publication for PepLine

PepLine citations

 (2)
library_books

The microbial community shifts of subgingival plaque in patients with generalized aggressive periodontitis following non surgical periodontal therapy: a pilot study

2016
Oncotarget
PMCID: 5354685
PMID: 27732961
DOI: 10.18632/oncotarget.12532

[…] efore truncating a read. 3) sequence_max_n: maximum number of ambiguous (N) characters allowed in a sequence. 4) phred_quality_score: last quality score considered low quality []. Then we used UPARSE pepline V7.0, 1001, http://drive5.com/uparse/ [] to pick operational taxonomic units (OTUs) by making OTU table. Sequences with ≥97% similarity were assigned to the same OTUs. We picked a representati […]

library_books

Gasdermin D is an executor of pyroptosis and required for interleukin 1β secretion

2015
Cell Res
PMCID: 4670995
PMID: 26611636
DOI: 10.1038/cr.2015.139

[…] mbing the MS1 and MS2 information of six runs. The pseudo-spectra were subjected to database search using X!tandem (Version 2013.06.15.1, Native and Kscore) which was integrated into Trans-Proteomics Pepline software (Version 4.7.1) against the full non-redundant, canonical mouse genome as annotated by UniprotKB/Swiss-Prot (downloaded in September 2014) appendant with common contaminants and rever […]


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PepLine institution(s)
CEA, DSV, iRTSV, Laboratoire d'Etude de la Dynamique des Protéomes, Grenoble, France

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