PepLine statistics

info info

Citations per year

Number of citations per year for the bioinformatics software tool PepLine

Tool usage distribution map

This map represents all the scientific publications referring to PepLine per scientific context
info info

Associated diseases


Popular tool citations

chevron_left Data analysis chevron_right
Want to access the full stats & trends on this tool?

PepLine specifications


Unique identifier OMICS_06914
Name PepLine
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No




No version available

Publication for PepLine

PepLine citations


The microbial community shifts of subgingival plaque in patients with generalized aggressive periodontitis following non surgical periodontal therapy: a pilot study

PMCID: 5354685
PMID: 27732961
DOI: 10.18632/oncotarget.12532

[…] efore truncating a read. 3) sequence_max_n: maximum number of ambiguous (N) characters allowed in a sequence. 4) phred_quality_score: last quality score considered low quality []. Then we used UPARSE pepline V7.0, 1001, [] to pick operational taxonomic units (OTUs) by making OTU table. Sequences with ≥97% similarity were assigned to the same OTUs. We picked a representati […]


Gasdermin D is an executor of pyroptosis and required for interleukin 1β secretion

Cell Res
PMCID: 4670995
PMID: 26611636
DOI: 10.1038/cr.2015.139

[…] mbing the MS1 and MS2 information of six runs. The pseudo-spectra were subjected to database search using X!tandem (Version 2013.06.15.1, Native and Kscore) which was integrated into Trans-Proteomics Pepline software (Version 4.7.1) against the full non-redundant, canonical mouse genome as annotated by UniprotKB/Swiss-Prot (downloaded in September 2014) appendant with common contaminants and rever […]

Want to access the full list of citations?
PepLine institution(s)
CEA, DSV, iRTSV, Laboratoire d'Etude de la Dynamique des Protéomes, Grenoble, France

PepLine reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PepLine