PepLine specifications

Information


Unique identifier OMICS_06914
Name PepLine
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Operating system Unix/Linux
Computer skills Advanced
Stability Stable
Maintained No

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Publication for PepLine

PepLine in publication

PMCID: 4670995
PMID: 26611636
DOI: 10.1038/cr.2015.139

[…] the ms1 and ms2 information of six runs. the pseudo-spectra were subjected to database search using x!tandem (version 2013.06.15.1, native and kscore) which was integrated into trans-proteomics pepline software (version 4.7.1) against the full non-redundant, canonical mouse genome as annotated by uniprotkb/swiss-prot (downloaded in september 2014) appendant with common contaminants […]


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PepLine institution(s)
CEA, DSV, iRTSV, Laboratoire d'Etude de la Dynamique des Protéomes, Grenoble, France

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