PepMapper specifications

Information


Unique identifier OMICS_06999
Name PepMapper
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability No
Maintained No

Publication for PepMapper

PepMapper in publications

 (4)
PMCID: 5763123
PMID: 29445754
DOI: 10.1155/2017/2680160

[…] the 3d-structure of the selected antigen. examples of bioinformatics tools for conformational b-cell epitope prediction using mimotopes include mimox [], pepitope [], episearch [], mimopro [], and pepmapper [] ()., as remarked before, methods for conformational b-cell epitope prediction generally require the 3d-structure of the antigen. exceptionally, however, ansari and raghava [] developed […]

PMCID: 4764922
PMID: 26899482
DOI: 10.1038/ncomms10765

[…] ltimate 3000, dionex)/nanoelectrospray ionization on an orbitrap mass spectrometer (ltq-orbitrap xl, thermo fischer scientific). sample desalting and pre-concentration were carried out online using a pepmapper column (0.3 × 10 mm, dionex). a gradient consisting of 0−40% b for 60 min, 40−80% b for 15 min (a=0.1% formic acid, 2% acetonitrile in water; b=0.1% formic acid in acetonitrile) at 300 nl mi […]

PMCID: 3736542
PMID: 23970944
DOI: 10.1155/2013/943636

[…] episearch and the epitope prediction method is episearch only []. episearch has the restriction that the number of mimotope sequences cannot exceed 30 amino acids. the third prediction platform is pepmapper which is released by our team in may 2012 []. pepmapper also provides online service based on three methods: pep-3d-search, mimopro, and the combined. since pep-3d-search is based […]

PMCID: 3686076
PMID: 23861727
DOI: 10.1155/2013/983829

[…] did not contain more epitope residues than others when all these peptides were mapped back to the surface of cd147 and compared with the docking results., we have also used other tools such as pepmapper [–] to interpret the phage display data and got some results similar to episearch. this makes the prediction above even convincing. , the computation of the top one model from rdock results […]


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PepMapper institution(s)
School of Computer Science and Information Technology, Northeast Normal University, Changchun, China

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