PePPER specifications

Information


Unique identifier OMICS_28069
Name PePPER
Interface Web user interface
Restrictions to use None
Input data Some DNA sequencing.
Input format FASTA,Genbank
Output data Three tables: the “Summary of Results” containing links to detailed information on analysis of regulons, TFBS, promoters, transcription terminators, RNA folding and motif analysis using MEME, “Files available for download”, and combined results of the TFBS and regulon mining.
Computer skills Basic
Stability Stable
Maintained Yes

Maintainer


  • person_outline Jan Kok <>

Publication for PePPER

PePPER institution(s)
Department of Molecular Genetics, University of Groningen, Groningen, The Netherlands; Biomolecular Sciences and Biotechnology Institute, Groningen, The Netherlands; Top Institute Food and Nutrition, Wageningen, The Netherlands; The Netherlands Kluyver Centre for Genomics of Industrial Fermentations, Delft, The Netherlands; Netherlands Consortium of Systems Biology, Amsterdam, The Netherlands
PePPER funding source(s)
Partly supported by grants from the Top Institute Food and Nutrition, Wageningen, the Netherlands and The Netherlands Organisation for Scientific Research (NWO), the Netherlands.

PePPER review

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yong tao

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Web
I want to use pepper for promoter analysis