PEPR specifications

Information


Unique identifier OMICS_12029
Name PEPR
Alternative name Pipelines for Evaluating Prokaryotic References
Software type Pipeline/Workflow
Interface Command line interface
Restrictions to use None
Output data A corrected reference genome assembly, genome positions with high and low purity based on biological and technical variation, and the percentage and identity of genus level genomic contaminants.
Biological technology Illumina, Life Technologies, Pacific Biosciences
Operating system Unix/Linux
Programming languages Python
Computer skills Advanced
Stability Stable
Maintained Yes

Versioning


Add your version

Documentation


Maintainer


  • person_outline Nathan D. Olson <>

Publication for Pipelines for Evaluating Prokaryotic References

PEPR institution(s)
Biosystems and Biomaterials Division, Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA; Statistical Engineering Division, Information Technology Laboratory, National Institute of Standards and Technology, Gaithersburg, MD, USA; Department of Bioengineering, Stanford University, Stanford, CA, USA
PEPR funding source(s)
Supported by the Department of Homeland Security (DHS) Science and Technology Directorate, the Interagency Agreement HSHQPM-14-X-00078, NIST and the FDA.

PEPR reviews

star_border star_border star_border star_border star_border
star star star star star

Be the first to review PEPR