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PepSite specifications

Information


Unique identifier OMICS_05700
Name PepSite
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes

Publication for PepSite

PepSite in publications

 (11)
PMCID: 5570166
PMID: 28460116
DOI: 10.1093/nar/gkx335

[…] the highest interface propensity are predicted as ‘interface’, where n is the number of residues that makes at least one contact in the model structure of the complex. interface predictions using pepsite () and pep-sitefinder () were made using their respective web servers. for pep-sitefinder, the top n residues were selected in the same way (except for 2jam, for which prediction failed). […]

PMCID: 5070911
PMID: 27519953
DOI: 10.1016/j.clim.2016.08.009

[…] using an lsm710 confocal microscope (zeiss inc. uk)., the epo protein sequence (accession number p11678) was divided using a 10 residue sliding window into 706 peptides which were submitted to the pepsite webserver , with the pdb structure for her2, 1n8z , chain c. five peptides were predicted to bind to her2 (p < 0.05), all containing the peptide klqpqr. the six residue peptide klqpqr […]

PMCID: 4878775
PMID: 27218803
DOI: 10.1371/journal.pone.0155911

[…] involves at least three experimentally verified examples of a single peptide mediating multiple ppis []. we also made an attempt to evaluate the predicted olp-mediated fhpi interactions through the pepsite2 [] web server, which predicted that several olps from myc and mdm2 can bind to multiple fhpis. furthermore, we also performed a blast search with the predicted olp sequences to find similar […]

PMCID: 4744334
PMID: 26909388
DOI: 10.1016/j.dib.2016.01.016

[…] trkb d5 surfaces. this binding interactions were assessed in terms of probability of ctxb participating residues binding to the trkb d5 receptor surface and theoretical scores determined using the pepsite2 server . peptide binding may also affect the tyrosine phosphorylation profile of the trkb receptor translating into its altered activity which can be assessed in future investigations. […]

PMCID: 4224745
PMID: 25069724
DOI: 10.1007/s12013-014-0151-x

[…] the scheme used for bioinformatic screening of peptides with high vegfr-binding affinity is shown in fig. . autodock-vina 1.1 software was used for molecular docking analysis [], while pymol and the pepsite program [] were used for surface functional group interaction analysis and prediction.fig. 1, based on the “lock-and-key” principle of the interaction between ligands and receptors, molecular […]


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PepSite institution(s)
CellNetworks, University of Heidelberg, Heidelberg, Germany

PepSite reviews

 (2)
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Yue Zheng

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Web
Why can’t open this website?

Khine Kyaw Oo

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Web
Good