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PEPstrMOD specifications


Unique identifier OMICS_10261
Name PEPstrMOD
Alternative name PEPstr
Interface Web user interface
Restrictions to use None
Computer skills Basic
Stability Stable
Maintained Yes



Publication for PEPstrMOD

PEPstrMOD citations


Prediction of Cell Penetrating Potential of Modified Peptides Containing Natural and Chemically Modified Residues

Front Microbiol
PMCID: 5906597
PMID: 29706944
DOI: 10.3389/fmicb.2018.00725

[…] of the modified peptide as an input and does the prediction. if a user has no structural information, he/she can generate pdb structure of their peptide up to 25 residues in length using server “pepstrmod” (singh et al., ) ( developed by our group specifically for predicting the structure of the modified peptide. in case of natural peptide user […]


Identification of putative unique immunogenic ZIKV and DENV1 4 peptides for diagnostic cellular based tests

Sci Rep
PMCID: 5524841
PMID: 28740150
DOI: 10.1038/s41598-017-05980-z

[…] predicted antigenicity and immunogenicity in iedb. three-dimensional structures of chosen zikv and denv peptides were first generated using the “natural peptides module for beginners” feature of pepstrmod with default settings, . pepstrmod results were then submitted to patchdock along with a predicted binding hla allele using the default settings. hla alleles were chosen based […]


Antagonistic action on NMDA/GluN2B mediated currents of two peptides that were conantokin G structure based designed

BMC Neurosci
PMCID: 5433008
PMID: 28511693
DOI: 10.1186/s12868-017-0361-4

[…] ucsf (university of california san francisco) chimera software (, []), and a refined three-dimensional structure was obtained in an hydrophilic environment using pepstr (peptide tertiary structure prediction server; as previously described []., details of this model are described in a separate publication []. briefly, […]


Screening and characterization of novel specific peptides targeting MDA MB 231 claudin low breast carcinoma by computer aided phage display methodologies

BMC Cancer
PMCID: 5109716
PMID: 27842517
DOI: 10.1186/s12885-016-2937-2

[…] bank (pdb) for tri-dimensional protein structures []. when protein structures were not available, they were predicted using the phyre2 software [] and the peptide structures were predicted using pepstrmod [, ]. the resulting pdb files were used in a protein-peptide analysis performed using cluspro 2.0 [, ] in all available models, by the peptide sequences identified by phage display […]


Roles of d Amino Acids on the Bioactivity of Host Defense Peptides

Int J Mol Sci
PMCID: 4964399
PMID: 27376281
DOI: 10.3390/ijms17071023

[…] there is a growing momentum of recent studies that are implementing support (i.e., development of forcefields, custom configuration, etc.) for non-canonical amino acids such as d-aas. for example, pepstrmod [] allows structure prediction of peptides encompassing the set of 20 canonical amino acids as well as the 210 non-canonical amino acids as described in swisssidechain []. yongye et al. [] […]


Efficient therapeutic delivery by a novel cell permeant peptide derived from KDM4A protein for antitumor and antifibrosis

PMCID: 5226491
PMID: 27081693
DOI: 10.18632/oncotarget.8682

[…] method were used to predict (svm threshold of – 0.1 and a motif e-value of 10). the 3d (three dimensional) structure of hpp10 was analyzed using peptide tertiary structure prediction server (pepstr), which allows modeling of small peptides with sequence length varying between 7 to 25 residues []. helical properties of hpp10 were delineated with schiffer edmundson wheel modelling using […]

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PEPstrMOD institution(s)
Bioinformatics Centre, Institute of Microbial Technology, Chandigarh, India

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