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Peptide binding site detection software tools | Drug discovery

Peptide–protein interactions are important to many processes of life, particularly for signal transmission or regulatory mechanisms. When no information is known about the interaction between a protein and a peptide, it is of interest to…
PepComposer
Web

PepComposer

A pipeline for the computational design of peptides binding to a given protein…

A pipeline for the computational design of peptides binding to a given protein surface. PepComposer only requires the target protein structure and an approximate definition of the binding site as…

ACCLUSTER
Web

ACCLUSTER

Predicts peptide binding site for a given protein structure. ACCLUSTER uses…

Predicts peptide binding site for a given protein structure. ACCLUSTER uses clustering chemical interactions between amino acid probes and the protein receptor. The binding sites returned can be used…

MEDock
Web

MEDock Maximum-Entropy based Docking

Predicts ligand binding sites. MEDock incorporates a global search strategy…

Predicts ligand binding sites. MEDock incorporates a global search strategy that exploits the maximum entropy property of the Gaussian probability distribution in the context of information theory.…

BiPPred
Web

BiPPred

Predicts peptides binding to the Hsp70 chaperone Binding immunoglobulin Protein…

Predicts peptides binding to the Hsp70 chaperone Binding immunoglobulin Protein (BiP). BiPPred is based on the amino acid probability at each specific sequence position of the bound peptide. It was…

PEP-SiteFinder
Web

PEP-SiteFinder

Predicts peptide-binding sites giving a protein structure and a peptide…

Predicts peptide-binding sites giving a protein structure and a peptide sequence. PEP-SiteFinder is a service that identifies the peptide-binding site without any knowledge of the potential…

SPRINT-str
Web

SPRINT-str Structure-based prediction of protein-Peptide Residue-level INTeraction

Predicts protein-peptide binding residues from protein 3D structure. SPRINT-Str…

Predicts protein-peptide binding residues from protein 3D structure. SPRINT-Str is a machine learning-based approach to calculates putative protein-peptide binding residues and binding sites. These…

Multi-VORFFIP
Web

Multi-VORFFIP

Predicts protein-protein, protein-peptide, protein-DNA and protein-RNA binding…

Predicts protein-protein, protein-peptide, protein-DNA and protein-RNA binding sites. Multi-VORFFIP utilizes a wide range of structural, evolutionary, experimental and energy-based information that…

PepSite
Web

PepSite

It can be used to predict peptide-binding spots from protein surfaces alone.

It can be used to predict peptide-binding spots from protein surfaces alone.

SPRINT
Web
PeptiMap
Web
Desktop

PeptiMap

Allows user to detect peptide-binding sites. PeptiMap realizes identification…

Allows user to detect peptide-binding sites. PeptiMap realizes identification of ligand-binding site thanks to mapping of the surface for solvents. It serves for the accurate mapping of peptide…

Pocket-Finder
Web

Pocket-Finder

Predicts ligand binding site. Pocket-Finder uses the interaction energy between…

Predicts ligand binding site. Pocket-Finder uses the interaction energy between the protein and a simple van der Waals probe to locate energetically favourable binding sites. It is a pocket version…

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