PECAN specifications

Unique identifier:
OMICS_20530
Software type:
Application/Script
Restrictions to use:
None
Output data:
Auxiliary scores describing the assigned evidence of detection with an associated retention time for every target peptide and PECAN-generated decoy peptide.
Programming languages:
Python
Computer skills:
Advanced
Requirements:
pymzml, numpy, percolator
Name:
PEptide-Centric Analysis
Interface:
Command line interface
Input data:
Centroided DIA data, a list of query (target) peptides, and a background proteome database (typically a species protein sequence database).
Operating system:
Unix/Linux
License:
GNU Lesser General Public License version 3.0
Stability:
Stable
Maintained:
Yes

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PECAN distribution

download

PECAN support

Maintainer

  • Michael J. MacCoss <>

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Publications

Institution(s)

Department of Genome Sciences, University of Washington, Seattle, WA, USA; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA; Department of Computer Science and Engineering, University of Washington, Seattle, WA, USA

Funding source(s)

Supported by the National Institutes of Health Grants P30 AG013280, R21 CA192983, P41 GM103533, and U54 HG008097, the US Department of Energy, Office of Science, Office of Biological and Environmental Research, and Early Career Research Program.

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