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MMseqs / Many-against-Many sequence searching

Allows clustering and searching of large protein datasets, such as UniProt, or 6-frame translated metagenomics sequencing reads. MMseqs is a software suite which contains three core modules: a pre-filtering module, an SSE2- and multi-core-parallelized local alignment module, and a clustering module. In addition to the modules, three workflows for sequence searching, clustering, and updating a clustering facilitate the most common tasks for the non-expert.