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Peptide sequence clustering software tools | Protein analysis

Peptides, either as protein fragments or as naturally occurring entities are characterized by their sequence and function features. Many times the researchers need to massively manage peptide lists concerning protein identification, biomarker…
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MMseqs
Desktop

MMseqs Many-against-Many sequence searching

Allows clustering and searching of large protein datasets, such as UniProt, or…

Allows clustering and searching of large protein datasets, such as UniProt, or 6-frame translated metagenomics sequencing reads. MMseqs is a software suite which contains three core modules: a…

Hammock
Desktop
Web

Hammock

A tool for peptide sequence clustering. Hammock is able to cluster extremely…

A tool for peptide sequence clustering. Hammock is able to cluster extremely large amounts of short peptide sequences into groups sharing sequence motifs. Hammock utilizes hidden Markov models to…

PepServe
Web

PepServe

A web application for peptide analysis, clustering and visualization according…

A web application for peptide analysis, clustering and visualization according to several peptide features into a graph. The features used are related to the positional features of the peptide…

MUSI
Desktop

MUSI MUltiple Specificity Identifier

A tool for uncovering multiple peptides and nucleic acids binding specificities…

A tool for uncovering multiple peptides and nucleic acids binding specificities from sequence data. MUSI provides a simple interface for processing short peptides or nucleic acid sequence data.…

GibbsCluster
Desktop
Web

GibbsCluster

Identifies multiple specificities in peptide data by performing two essential…

Identifies multiple specificities in peptide data by performing two essential tasks simultaneously: alignment and clustering of peptide data. The applications of the method are numerous, ranging from…

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